Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0573 ATGGAGGCGAAGAACAAAGTGAAGATCGATGATTCTACAGCGGAGTCTCCAACTTCGGTCCTTGAAGACGAGGCTGTCTGTGCCCCAAAAGAAGAAGTTAAGTTGGAGGAAGAAGTGACTGCAGACATCAAAGATGATGGGACCTCTCTTATATCGAAAACAATGGTGGAGGAGGAAGAGAATTTAATTGAAGCTAGGATGAAGGAAGAGGAGGTACAGTGTGAGGAGGTACCTGACCTTAATGACACACAGTTTAACAAATTGGATGAGCTTTTGACTCAAACCAAACTGTACTCTGAGTTTCTGCTGGAGAAAATGGACGACATCACACTTGCTGTGGGTGAACAAGAGAATAGGGAAGAGCAAGAGAGCAATCCTTCTGCAAAGAAGAAGGGCTGTGGATCAAAAAGAAAAGCTGCTTCCCAGTACAATACTAGGAAGGCCAAAAAGGCAGTCACTGCCATGCTGACAAGATCAGAAGAAAGTGAGAAGACTGAGGATACGAACATGACTGAGGAAGAAAGAGTTGAGAAAGAGCAAAAAGAGCTCATGCCCTTACTGACAGGTGGAAAATTGAAGACTTATCAACTGAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACGATTGGATTTCTCTCACATCTAAAAGCAAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCAACCCTCTCAAACTGGGTGAACGAGATTTCTAGGTTTGCACCATCACTCCCTGCTGTTATCTACCATGGTGACAAGAAACAGAGAGATGAGATCCGGAGGAAACATATGCCTACTAGAACAATTGGCCCGGAATTTCCCATAGTCATAACTTCTTATGAGATTGCTTTAAATGATGCCAAGAAATATTTCAGGTCATACAATTGGAAATATATTGTTGTTGATGAGGGACACAGACTCAAAAACTCACAATGCAAATTAGTGAAGGCATTGAAATTCATAAATGTTGAAAACAAGCTTCTTTTAACTGGAACTCCTCTTCAGAATAACTTGGCTGAACTATGGTCTCTGTTGAACTTCATTTTGCCTGATATTTTTGCATCCCTTGAAGAGTTTGAGTCATGGTTTAATCTGTCAGGGAAGTGCAATAATGAAGCAACTAAGGAAGAACTGGAAGAGAAACGAAGATCCCAAGTTGTAGCAAAGCTTCATGCCATTCTTCGGCCCTTTCTTCTACGTAGGATGAAATCTGATGTTGAGATTATGTTGCCGCGGAAAAAGGAGATTATTATCTATGCAAACATGACTGAGCATCAGAAGAATTTGCAGGATCATTTAGTTAATAAGACGTTGGGGAACTATTTGAAAGAAAATATGTCAAGTGGACTTTCTGTTCCTGCAATTATGATTCGTAATTTGGCTATTCAACTTAGGAAGGTGTGTAACCATCCTGATCTCCTTGAGTCAGCATTTGATGATTCATATTTGTATCCTCCTTTGGAAGAGATAGTTGGACAATGTGGAAAATTCCATTTGCTTGATCGATTGCTGCAACGTTTATTTTCAAGGAATCACAAAGTTCTTATCTTCAGTCAGTGGACTAAAGTGTTAGATATAATGGATTATTATTTTAGTGAAAAAGGCTTTGCAGTTTGCAGGATTGATGGTAGTGTGAAACTGGAAGAGAGGAAACAACAGATCCAGGACTTCAATGATGTAAATAGCAATTGTAGAGTTTTTCTTCTTTCTACTAGGGCTGGTGGGTTGGGAATCAATCTCACTGTAGCTGATACATGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAAGCCATGGATAGATGTCATAGAATAGGCCAAACTAAACCTGTTCATGTTTACAGGCTCTCAACTGCCCAATCTATAGAGGGTCGCATGTTGAAAAGAGCTTTCAGCAAATTGAAGCTTGAGCATGTAGTGATTGAGAAAGGACAATTTCATCAAGAACGTACAAAACCTGCCAGTATGGATGAAATTGAGGAAGATGATGTTTTGGCATTGCTTCGTGATGAAGAAACAGCCGAAGATAAAAAGATACATACAGATATTAGTGATGAAGACCTGGAGAAGCTCTTGGATCGCAGTGATCTTATAGTCAACGACTCAAACGATGATAACTTCAAAGCTCCAGTCAGTGCCTTTCCTCTTAAAGGGCCGGGGTGGGAGGTGGTGATTCCAACTGCGACTGGGGGCATGCTCTCTACTCTTAACTGCTAG 2292 0.4071 MEAKNKVKIDDSTAESPTSVLEDEAVCAPKEEVKLEEEVTADIKDDGTSLISKTMVEEEENLIEARMKEEEVQCEEVPDLNDTQFNKLDELLTQTKLYSEFLLEKMDDITLAVGEQENREEQESNPSAKKKGCGSKRKAASQYNTRKAKKAVTAMLTRSEESEKTEDTNMTEEERVEKEQKELMPLLTGGKLKTYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPAVIYHGDKKQRDEIRRKHMPTRTIGPEFPIVITSYEIALNDAKKYFRSYNWKYIVVDEGHRLKNSQCKLVKALKFINVENKLLLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSGKCNNEATKEELEEKRRSQVVAKLHAILRPFLLRRMKSDVEIMLPRKKEIIIYANMTEHQKNLQDHLVNKTLGNYLKENMSSGLSVPAIMIRNLAIQLRKVCNHPDLLESAFDDSYLYPPLEEIVGQCGKFHLLDRLLQRLFSRNHKVLIFSQWTKVLDIMDYYFSEKGFAVCRIDGSVKLEERKQQIQDFNDVNSNCRVFLLSTRAGGLGINLTVADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIEGRMLKRAFSKLKLEHVVIEKGQFHQERTKPASMDEIEEDDVLALLRDEETAEDKKIHTDISDEDLEKLLDRSDLIVNDSNDDNFKAPVSAFPLKGPGWEVVIPTATGGMLSTLNC* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0573 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 717 IPR027417 -
Gso11g0573 763 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 3 762 - -
Gso11g0573 763 Coils Coil 162 182 - -
Gso11g0573 763 Gene3D - 156 422 IPR038718 -
Gso11g0573 763 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 373 IPR014001 -
Gso11g0573 763 MobiDBLite consensus disorder prediction 153 180 - -
Gso11g0573 763 MobiDBLite consensus disorder prediction 115 180 - -
Gso11g0573 763 MobiDBLite consensus disorder prediction 1 23 - -
Gso11g0573 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 423 IPR027417 -
Gso11g0573 763 Pfam Helicase conserved C-terminal domain 521 631 IPR001650 -
Gso11g0573 763 PANTHER SNF2/RAD54 HELICASE FAMILY 3 762 - -
Gso11g0573 763 Coils Coil 55 75 - -
Gso11g0573 763 SMART ultradead3 188 384 IPR014001 -
Gso11g0573 763 CDD SF2_C_SNF 507 641 - -
Gso11g0573 763 Gene3D - 429 733 IPR027417 -
Gso11g0573 763 Pfam SNF2-related domain 195 495 IPR000330 GO:0005524|GO:0140658
Gso11g0573 763 SMART helicmild6 547 631 IPR001650 -
Gso11g0573 763 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 521 684 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0573 Gso-Chr11 5092503 5098913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0573 178 652 RAD5 or RAD16-like Gene Family AT3G16600 24.483 3.38e-31 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso11g0573 SNF2_N 1.3e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0573 K19001 - gmx:100817842 1514.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0573 11 5092503 5098913 Gso11g0573 11 5092503 5098913 ECH