Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0570 ATGTCTTCTCCTCATAACTCTTCTCCTGATGACTCTAGCCCTGATAATGCAACACCTGATAACTCCACCCCTGATGACTCTGACAACTCATCACCACCATCACAATCACCACCTCCGTCGTCGCCACCACCGTCATCACCACCTCCATCGTCGCCACCACCCTCATCACCACCTCCATCGTCACCACCACCCTCATCACCACCTCCATCATCGCCACCACCCCTGTCGCCACCACCATCATCTTCATCATCACCACCACCCTCTCCTTCCCCTCCAACATCAAACAGCCCAAGCCCTCCATCACCTAATGGGTCCTCACAGTCACCTTCTCCACCCGGATCATCACATTCTCCACCCTCCTTTGAATCACCGTCTCCTCCACACAAATCCTTAGACTCTCCACCGTCCTCAAGGAACTCTGGCAGTGGCAGTGGCAGTAGCAACGGTGGTGGTAATGACAGTGGCGGTGACGGTAGCAGCAAGGCCATAGTTGGAGCAGTGCTTGGCGTAGGAAGCGTGCTTCTTATTTTGGTCATTGTTTGCGTTGTTTGCAACAGGAAGAAGAAGAAGAAGAATACAAACACTTGGAATCATAATAACTATTACAATAGTGGGCAACATCCGAGTTATTACGGAGGTCCACATGGGGACCATGTTGTGAGGATGCAACAAAATGGAATGGGCCCTGGTGGCGGTGGTGGGTGGGGTGCACCACCCCCACCTCCGATGATGATGAATAGTGCTGACTTTAGCTCAAATTACTCGACAGGACCGCCCCCTTTGCCTCCTCCCTCACCAACCCTTGCTCTAGGCCTCAAAGGGGGCACCTTCTCTTATGAGGAATTAGCAGCTGCCACCAACGGATTCAATGATGCAAATTTGATAGGACAAGGTGGATTCGGTTATGTCCATAAGGGTGTTTTGCCTAGTGGAAAGGAAGTGGCAGTTAAGAGTCTTAAAGCAGGTAGTGGCCAAGGAGAAAGAGAGTTCCAAGCTGAGATTGACATCATTAGCCGTGTCCATCATCGCCATCTCGTATCACTTGTTGGATACTCTATTTCTGGTGGCCAGAGGATGCTGGTCTATGAATTTATTCCCAATAACACATTGGAATATCACCTCCATGGAAAGGGTAGGCCTACCATGGATTGGGCAACTAGAATGCGGATTGCAATAGGATCCGCTAAAGGGCTTGCTTATCTTCATGAGGACTGTCATCCTCGTATCATCCATCGCGATATCAAAGCTGCCAATGTCCTTATTGATGATAGCTTCGAAGCAAAGGTTGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAATACTCATGTATCGACTCGTGTCATGGGAACTTTCGGGTACCTAGCCCCTGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACTGGGAAGCGACCTGTTGATCACACAAATGCCATGGACGACAGCTTAGTAGACTGGGCTCGACCACTTCTGACTCGTGGACTAGAGGAGGATGGCAACTTTGGAGAGTTGGTTGATGCATTTTTGGAGGGAAACTACGATGCTCAAGAACTGTCAAGGATGGCAGCTTGTGCTGCTGGTAGCATTCGTCATTCTGCCAAGAAACGTCCAAAAATGAGCCAGATTGTAAGAATATTGGAAGGAGATGTCTCACTGGATGACTTGAGAGATGGTATTAAGCCGGGGCAAAATGTTGTTTACAACTCTTCACCTAGCTCAAATCAGTATGACACAATGCAATACAATGCTGATATGCAGAAGTTCAGAAAGGCAGTGTTCTCTAATAGCGACGAATTTGGCACCAGCAGTGGCTCCAGTGGTGAAGTGAGCCAGAAGCAGCAACGGCTCTAG 1899 0.4855 MSSPHNSSPDDSSPDNATPDNSTPDDSDNSSPPSQSPPPSSPPPSSPPPSSPPPSSPPPSSPPPSSPPPSSPPPLSPPPSSSSSPPPSPSPPTSNSPSPPSPNGSSQSPSPPGSSHSPPSFESPSPPHKSLDSPPSSRNSGSGSGSSNGGGNDSGGDGSSKAIVGAVLGVGSVLLILVIVCVVCNRKKKKKNTNTWNHNNYYNSGQHPSYYGGPHGDHVVRMQQNGMGPGGGGGWGAPPPPPMMMNSADFSSNYSTGPPPLPPPSPTLALGLKGGTFSYEELAAATNGFNDANLIGQGGFGYVHKGVLPSGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYSISGGQRMLVYEFIPNNTLEYHLHGKGRPTMDWATRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDHTNAMDDSLVDWARPLLTRGLEEDGNFGELVDAFLEGNYDAQELSRMAACAAGSIRHSAKKRPKMSQIVRILEGDVSLDDLRDGIKPGQNVVYNSSPSSNQYDTMQYNADMQKFRKAVFSNSDEFGTSSGSSGEVSQKQQRL* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0570 632 Gene3D Transferase(Phosphotransferase) domain 1 365 572 - -
Gso11g0570 632 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Gso11g0570 632 SMART serkin_6 289 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0570 632 MobiDBLite consensus disorder prediction 1 30 - -
Gso11g0570 632 Pfam Protein tyrosine and serine/threonine kinase 294 494 IPR001245 GO:0004672|GO:0006468
Gso11g0570 632 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 60 625 - -
Gso11g0570 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Gso11g0570 632 Gene3D Phosphorylase Kinase; domain 1 269 364 - -
Gso11g0570 632 PANTHER RECEPTOR-LIKE KINASE 60 625 - -
Gso11g0570 632 SUPERFAMILY Protein kinase-like (PK-like) 268 562 IPR011009 -
Gso11g0570 632 MobiDBLite consensus disorder prediction 31 131 - -
Gso11g0570 632 ProSiteProfiles Protein kinase domain profile. 289 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0570 632 PRINTS Proline rich extensin signature 12 24 - -
Gso11g0570 632 PRINTS Proline rich extensin signature 33 54 - -
Gso11g0570 632 PRINTS Proline rich extensin signature 57 73 - -
Gso11g0570 632 PRINTS Proline rich extensin signature 74 91 - -
Gso11g0570 632 MobiDBLite consensus disorder prediction 132 155 - -
Gso11g0570 632 MobiDBLite consensus disorder prediction 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0570 Gso-Chr11 5075020 5079300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0570 153 613 Trihelix Transcription Factor Family AT1G70460 50.209 1.84e-155 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gso11g0570 PK_Tyr_Ser-Thr 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0570 - - gmx:100788987 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0570 11 5075020 5079300 Gso11g0570 11 5075020 5079300 ECH
Gso11g0570 11 5075020 5079300 Gso2g0482 2 5084257 5089171 PCT
Gso11g0570 11 5075020 5079300 Gso16g1128 16 30109152 30114285 PCT
Gso2g0482 2 5084257 5089171 Gso11g0570 11 5075020 5079300 PCT
Gso16g1128 16 30109152 30114285 Gso11g0570 11 5075020 5079300 PCT