Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0554 ATGAGAGTTCCCGTTCCCTCATCCCCACAGGCCAACCCAAAACCCACCAATAACGTAGTCCGTACCATTGCCCTTCCCAACCTCAACACCACCACCACCACCACCACCACGAGCTTGTGCTACGAGCCCACTTCTGTCCTCGACCTGTGCCGGAGCCCGAGCCCGAGCCCGGGCACCGAAAAGCCCACCAACGATCACGCCGTTCTCGACCTGGACGACCATGCGTTGCACAACTTGGACTGGGACTCCATCATGAAGGACTTGGGCTTACACGACGACTCCGCCACCCCCGTATTGAAAACTTTTCTCCACCCCGACGACGACAACAACAACCCATCATGCGACGACTTCACACCCTTCGACCACGCGCTTGAATTCACCTCTCTCTCCGACATCTACTCCAACCAAAACCTCGCCTTCGATTTCAACCACTTGCCTCACGACTTCAACCACCACCTCAATGGCTTCGATTTCATCGAAGAGCTCATCCGCGCCGCCGACTGCTTCGACACCAAACAGTTACACGTGGCGCAGGTGATATTGGAGCGGCTCAATCAAAGGCTACGATCTCCTGTGGGAAAACCCCTCCAGCGCGCAGCGTTTTACTTCAAAGAAGCTCTCCAGAGTCTTCTCTCCGGTTCGAACCGGACCCCGAGGATTTCGTCCCTGGTGGAAATCGTGCACAGTATCAGAACCTTCAAGGCCTTTTCGGGAATTTCGCCGATCCCAATGTTCTCTATCTTCACCACCAATCAAATAGTTCTGGATCACGCTGCGTGCTCCTTCATGCACGTCATCGACTTCGATATAGGTCTTGGGATCCAATACGCTTCTCTCATGAAGGAGATTGCGGAGAAGGCGGCGGAGTCGCCGGTGCTCCGAATCACTGCCGTCGTTCCGGAAGAATACGCCGTCGAGAGCACGCTCGTCCACGACAACCTCGCGCAGTTCGCTCTCGAACTCAGGATCCGAGTGCAGGTCGAGTTCGTGGCGCTTCGAACCTTCGAGAATCTCTCCTTCAAGTCCGTGAAGTTCGTCGACGGCGAGAATACCACCGTGCTCTTGTCGCCGGCGATTTTTGGCCACCTCGGCAACGCCGCCGCGTTCCTGGCGGACGTGCGGAGGATCTCGCCGAGCATGGTGGTTTTCGTGGACGGTGAGGGATGGGCGGAGACTGCCACGGCATCGGCGGCGTCGTTCCGGCGTGGCGTTGTGAGCAGTTTGGAGTACTACTCGATGATGCTGGAGTCGCTTGACGCGTCGACGGTGGGAGGAGGAGGGGAGTGGGTGAGGAGAATCGAGATGATGCAACTGGGGCCGAAGATTTTGGCGGCGGTGGAAAGCGCCTGGCGGAAGTTGCCGCCGTGGAGGGAGGCGTTTTATGGCGCCGGAATGAGGCCGGTGCAGTTAAGCCAGTTTGCGGATTTTCAAGCGGAGTGCTTGTTAGCGAAGTCACAAATCAGAGGCTTCCACGTGGCAAGACGTCAGAACGAACTGGTGCTTTTCTGGCATGATAGGGCCATGGTTGCCACGTCAGCATGGCGCTGTTAG 1551 0.5725 MRVPVPSSPQANPKPTNNVVRTIALPNLNTTTTTTTTSLCYEPTSVLDLCRSPSPSPGTEKPTNDHAVLDLDDHALHNLDWDSIMKDLGLHDDSATPVLKTFLHPDDDNNNPSCDDFTPFDHALEFTSLSDIYSNQNLAFDFNHLPHDFNHHLNGFDFIEELIRAADCFDTKQLHVAQVILERLNQRLRSPVGKPLQRAAFYFKEALQSLLSGSNRTPRISSLVEIVHSIRTFKAFSGISPIPMFSIFTTNQIVLDHAACSFMHVIDFDIGLGIQYASLMKEIAEKAAESPVLRITAVVPEEYAVESTLVHDNLAQFALELRIRVQVEFVALRTFENLSFKSVKFVDGENTTVLLSPAIFGHLGNAAAFLADVRRISPSMVVFVDGEGWAETATASAASFRRGVVSSLEYYSMMLESLDASTVGGGGEWVRRIEMMQLGPKILAAVESAWRKLPPWREAFYGAGMRPVQLSQFADFQAECLLAKSQIRGFHVARRQNELVLFWHDRAMVATSAWRC* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0554 516 ProSiteProfiles GRAS family profile. 149 515 IPR005202 -
Gso11g0554 516 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 515 IPR005202 -
Gso11g0554 516 Pfam GRAS domain family 159 515 IPR005202 -
Gso11g0554 516 PANTHER SCARECROW-LIKE PROTEIN 15 6 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0554 Gso-Chr11 4971250 4973272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0554 69 515 GRAS Transcription Factor Family AT4G36710 55.626 3.68e-167 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso11g0554 GRAS 3.9e-81 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0554 - - gmx:100784206 1011.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0554 11 4971250 4973272 Gso11g0554 11 4971250 4973272 ECH
Gso1g1521 1 51895737 51897781 Gso11g0554 11 4971250 4973272 GST
Gso11g0554 11 4971250 4973272 Gso2g0490 2 5178375 5180457 PCT
Gso11g0554 11 4971250 4973272 Gso16g1133 16 30199308 30201479 PCT
Gso2g0490 2 5178375 5180457 Gso11g0554 11 4971250 4973272 PCT
Gso16g1133 16 30199308 30201479 Gso11g0554 11 4971250 4973272 PCT