Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0552 ATGGGAACCGGTGAAGAAAGCACAGCTAAAGTTCCTAAACCATCTTCTACTTCTTCAATTCAGATACCACTGGCACCTTCATATCCTGATTGGTCAAGCTCGATGCAGGCTTACTATGCTCCTGGAGCCACTCCACCTGCATTTTTTGCCTCAAATATTGCTTCTCCAACTCCCCATTCTTATATGTGGGGAAGCCAGCACCCTCTAATTCCACCATATAGTACTCCTGTTCCATATCCAGCTATATATCCTCCTGGGAATGTCTATGCTCATCCTAGCATGGCAATGACCCTGAGCACCACACAGAATGGTACAGAGTTTGTAGGAAAGGGTTCTGATGAAAAAGATCGGGTTTCTGCCAAAAGTTCAAAGGCTGTGTCTGCAAACAATGGTTCCAAAGCAGGAGACAATGGAAAGGCAAGCTCAGGTCCCAGAAATGATGGCACCTCACAAAGTGCTGAAAGTGGTTCAGAGGGATCTTCGGATGCTAGTGATGAGAATACTAACCAACAGGAATCGGCTACAAACAAGAAAGGGAGTTTTGACCAAATGCTTGTTGATGGTGCTAATGCACGGAACAATTCTGTGAGCATCATTCCTCAACCTGGAAATCCCGCTGTGTCAATGTCTCCAACTAGTCTTAATATTGGAATGAACTTGTGGAATGCATCTCCTGCTGGTGACGAAGCTGCAAAAATGAGACAGAATCAGTCTTCAGGAGCTGTTACTCCTCCAACCATAATGGGACGTGAAGTCGCGCTGGGTGAACACTGGATACAAGATGAACGTGAACTAAAGAAACAGAAAAGGAAACAGTCTAATAGGGAGTCTGCTAGGAGATCAAGACTACGCAAGCAGGCTGAGTGTGAAGAGTTACAAAAGAGGGTGGAGTCTCTGGGAAGTGAGAATCAAACTCTCAGAGAAGAGCTTCAGAGAGTATCTGAAGAATGCAAAAAACTTACATCTGAAAATGATTCCATCAAGGAAGAGTTAGAACGGTTGTGTGGACCAGAAGCAGTTGCTAATCTTGAATAA 1035 0.4454 MGTGEESTAKVPKPSSTSSIQIPLAPSYPDWSSSMQAYYAPGATPPAFFASNIASPTPHSYMWGSQHPLIPPYSTPVPYPAIYPPGNVYAHPSMAMTLSTTQNGTEFVGKGSDEKDRVSAKSSKAVSANNGSKAGDNGKASSGPRNDGTSQSAESGSEGSSDASDENTNQQESATNKKGSFDQMLVDGANARNNSVSIIPQPGNPAVSMSPTSLNIGMNLWNASPAGDEAAKMRQNQSSGAVTPPTIMGREVALGEHWIQDERELKKQKRKQSNRESARRSRLRKQAECEELQKRVESLGSENQTLREELQRVSEECKKLTSENDSIKEELERLCGPEAVANLE* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0552 344 Coils Coil 275 330 - -
Gso11g0552 344 MobiDBLite consensus disorder prediction 9 23 - -
Gso11g0552 344 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 269 284 IPR004827 GO:0003700|GO:0006355
Gso11g0552 344 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 344 IPR044827 GO:0003700|GO:0006355|GO:0043565
Gso11g0552 344 SMART brlzneu 262 326 IPR004827 GO:0003700|GO:0006355
Gso11g0552 344 MobiDBLite consensus disorder prediction 105 181 - -
Gso11g0552 344 MobiDBLite consensus disorder prediction 1 23 - -
Gso11g0552 344 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 264 327 IPR004827 GO:0003700|GO:0006355
Gso11g0552 344 MobiDBLite consensus disorder prediction 264 288 - -
Gso11g0552 344 CDD bZIP_plant_GBF1 267 317 IPR045314 GO:0003700|GO:0006355
Gso11g0552 344 MobiDBLite consensus disorder prediction 122 180 - -
Gso11g0552 344 Pfam bZIP transcription factor 262 324 IPR004827 GO:0003700|GO:0006355
Gso11g0552 344 PANTHER G-BOX-BINDING FACTOR 1 1 344 - -
Gso11g0552 344 SUPERFAMILY Leucine zipper domain 265 321 IPR046347 GO:0003700|GO:0006355
Gso11g0552 344 Pfam G-box binding protein MFMR 1 94 IPR012900 -
Gso11g0552 344 Gene3D - 265 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0552 Gso-Chr11 4958687 4963968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0552 1 344 bZIP Transcription Factor Family AT4G36730 52.312 9.40e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso11g0552 MFMR 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0552 K09060 - gmx:547788 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0552 11 4958687 4963968 Gso11g0552 11 4958687 4963968 ECH