Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0551 ATGAATCATCGACCACCTTTCCAAGACCACATGATGCTCATGTCTCAGTTATTCCCTGCTGATGCATACACTCAAATTATTTCTCAACAAGGAGAGACTAATAAGAAGCCAAGACGCCGTCGTAACAAGAAGAACAAAGGAGGAGAAAACGGTGCCTCGGAAGCCAACAAGAAGAGGAAGCTTAGTGAGGTGCAAGTTAATTTACTTGAACAAAACTTTGGAAATGAACGCAAACTTGAGTCCGAAAGAAAGGATAGGCTGGCAATGGAGCTTGGTTTGGACCCTCGACAAGTTGCTGTGTGGTTTCAAAACAGAAGAGCCCGTTGGAAGAACAAAAAGTTGGAAGAAGAGTACTCCAGCCTTAAAAAAAATCATGAAGCCACCTTGCTTGAGAAATGTTGCCTGGAGAGTGAGGTGTTGAAGCTCAAAGAGCAACTTTCTGAGGCAGAGAAAGAGATTCAGAGGCTGCTAGAGAGTGCCGAGAGAGTCCCAAGCAACAGTTCTAGTTCGTCACAGTCACAATCAATGGAAGCGGTGGACCCACCATTCTTTGGGGAATTTGGAGTTGATGGATATGAGGATGATGTGTTTTACGTGCCTGAGACCCATTACATCAACGGCATGGAATGGATTAATCTGTATATGTAA 648 0.4414 MNHRPPFQDHMMLMSQLFPADAYTQIISQQGETNKKPRRRRNKKNKGGENGASEANKKRKLSEVQVNLLEQNFGNERKLESERKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSSLKKNHEATLLEKCCLESEVLKLKEQLSEAEKEIQRLLESAERVPSNSSSSSQSQSMEAVDPPFFGEFGVDGYEDDVFYVPETHYINGMEWINLYM* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0551 215 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Gso11g0551 215 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Gso11g0551 215 MobiDBLite consensus disorder prediction 46 61 - -
Gso11g0551 215 MobiDBLite consensus disorder prediction 28 61 - -
Gso11g0551 215 Coils Coil 52 72 - -
Gso11g0551 215 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 8 214 - -
Gso11g0551 215 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 8 214 IPR045224 GO:0003700
Gso11g0551 215 SUPERFAMILY Homeodomain-like 56 122 IPR009057 -
Gso11g0551 215 MobiDBLite consensus disorder prediction 160 177 - -
Gso11g0551 215 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Gso11g0551 215 Gene3D - 48 122 - -
Gso11g0551 215 CDD homeodomain 57 113 IPR001356 GO:0003677
Gso11g0551 215 SMART HOX_1 55 116 IPR001356 GO:0003677
Gso11g0551 215 Coils Coil 139 163 - -
Gso11g0551 215 Coils Coil 104 131 - -
Gso11g0551 215 MobiDBLite consensus disorder prediction 158 177 - -
Gso11g0551 215 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Gso11g0551 215 Pfam Homeodomain 57 111 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0551 Gso-Chr11 4951548 4953822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0551 10 215 Homeobox Transcription Factor Family AT4G36740 58.140 9.27e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gso11g0551 Homeodomain 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0551 K09338 - gmx:100810736 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0551 11 4951548 4953822 Gso11g0551 11 4951548 4953822 ECH
Gso1g1524 1 51916500 51918794 Gso11g0551 11 4951548 4953822 GST
Gso11g0551 11 4951548 4953822 Gso2g0492 2 5194151 5195990 PCT
Gso2g0492 2 5194151 5195990 Gso11g0551 11 4951548 4953822 PCT