Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0541 ATGACGAGTGGTTTTGGTGAATCAACGAGAGCATCTGCACCGAGCCCATCATGCTCGGGGAACAGTTCAAACGATGCTGGCGATTTCGAATGCAACATATGCTTCGATTTGGCGCAAGATCCTGTGATCACACTCTGTGGTCACCTATTCTGTTGGCCATGCCTTTATAGGTGGCTCCATCATCACTCCCATTCTCAGGAGTGCCCTGTTTGCAAGGCCCTTGTGCAGGAAGAGAAATTGGTTCCTCTTTATGGAAGGGGCAAAACACAGACCGATCCCAGGACCAAGTTATATCCTGGAATGGAGATCCCCCACCGTCCTTCCGGGCAGAGGCCGCAAACCATGCCGCCCCCGCCGCCTCCCGAGGTCAACCCATTTGGGAGTTATGGGTTTGGACTCATGGGAGGGTTCATTCCTATGGCAACTGCCCGATTTGGAAACTTCACGCTTTCCACTGCCTTTGGTGGGTTTATCCCGTCCCTGCTCAACATTCATTTCCATGGTTTTCAGGATGCCACTGTCTATGGGACAACGTCTGGTTATCCCTTTGGGTTTAATGGCTTTCATGGAGGGAATGCGCGGGGTTTTATGCAGGCAACCGGTCAAGTGCAGCGGCAGGAGGACAATGTTTTGAAGAATCTGCTTATGTTGATTGGGTTTCTCGTCCTTCTTACGGTTATTTTTGTGTGGTAA 693 0.5094 MTSGFGESTRASAPSPSCSGNSSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKTQTDPRTKLYPGMEIPHRPSGQRPQTMPPPPPPEVNPFGSYGFGLMGGFIPMATARFGNFTLSTAFGGFIPSLLNIHFHGFQDATVYGTTSGYPFGFNGFHGGNARGFMQATGQVQRQEDNVLKNLLMLIGFLVLLTVIFVW* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0541 230 SMART ring_2 31 71 IPR001841 -
Gso11g0541 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 228 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gso11g0541 230 SUPERFAMILY RING/U-box 27 84 - -
Gso11g0541 230 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 228 - -
Gso11g0541 230 MobiDBLite consensus disorder prediction 1 20 - -
Gso11g0541 230 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Gso11g0541 230 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Gso11g0541 230 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Gso11g0541 230 CDD RING-HC_AtRMA_like 29 73 - -
Gso11g0541 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 93 IPR013083 -
Gso11g0541 230 MobiDBLite consensus disorder prediction 94 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0541 Gso-Chr11 4846177 4847625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0541 21 228 C3H Transcription Factor Family AT2G23780 62.911 2.94e-89 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0541 K10666 - gmx:100811423 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0541 11 4846177 4847625 Gso11g0541 11 4846177 4847625 ECH
Gso1g1533 1 51998678 52000086 Gso11g0541 11 4846177 4847625 GST