Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0531 ATGGGTTGGTTTACCAAGTTGCTTAAGGGCTCTGATCATAAAATTTTACGAGGACAATACCATGGCAAATATGGAGAGGACAGAATTTGGGATAATCATCATAGTTCAATGGATGATTTGACTGATATTGAGAAAGAAGACATTGACCGTGCAATTGCACTTTCTCTGTCAGAGGAGGATCATAAAGGGAAAAAAGTTGTTGATTATGACTCTCAATCTGAAGATGAGGAACTTTGTAAAATTGATGATGATGAGGAGGATGAACATCTTGTTAAAGTTCATCTAGATGAAGATGAACGTCTTGCTAAAATTCAGCAAGAAGAAGAAGAACGTCTTGCTAAAATTCAACAAGAAGATGAGCATCTTGCTAAAATTCAACAAGAAGAAGAAGAACGTCTTGCTAAAATTCAACAAGAAGATGAATGTCTTGCTAAAATTCAACAAGAGGATGAACGTCTTGCTAAAGCTCAACTTGAGGAAGACGAGCAACTTGCTAGGGCAATTCAAGAAAGCTTGAAAATTGGTTCTCCTCCTCAATATGACAATGGTTCTTCAATTCTATCTTTTCCTCACCTTTTCCCCCCTGGATACAGAATCTGTGCTGGATGCAAGACTGAGATTGGCCAAGGAAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCAGAATGCTTCTGCTGCCATGCATGCCATCTTCCAATCACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCATAAATCATGCTATAGGGAGAAGCATCACCCAAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCATCTGGCCTCATTGAGTATAGAGCTCATCCTTTCTGGCTACAAAAATACTGCCCATCACATGAGCTTGATGGCACTTCTCGTTGTTGTAGTTGCGAAAGAATGGAGCCAAGGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTTTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAACAAATTCCTATGCTCTTGGTTGAGAGACAAGCGCTGAATGAGGCTATGGAGGGAGAAAAGAATGGTCATCACCACTTACCCGAAACTAGAGGACTATGCTTGTCAGAAGAGCAAACTGTCACCACTATTTCAAGGAGGCCAAGGATTGCAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGCTGATCCGTTGTTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGGTTGTTAACAGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTTAGGCTTAAAGGTTATCCTAACCTCAGTCCAGAAGTTGAAGAAGGAATCTGCCAAGTTTTGGCTCATATGTGGTTAGAATCAGAGCTCTATTCTGGATTTGGGAATGATGGTGCATCATCCTCAACATCATCTTTGTCTTCGTCATCACCTTCCTCCTCTTCTGTCTCAACAAAGAAGGGTAAACGGTCCGACTTTGAGAAGAAACTTGGTGATTTTTTTAAACACCAGATTGAGTCAGATACCTCCTCAGCTTATGGAGATGGATTCAGATTGGGTAACCAAGCAATGGTCAAGTATGGGCTTAAAAGGACCCTTGACCATATCCATATGACAGGAAGTTTTCCATATTAA 1713 0.404 MGWFTKLLKGSDHKILRGQYHGKYGEDRIWDNHHSSMDDLTDIEKEDIDRAIALSLSEEDHKGKKVVDYDSQSEDEELCKIDDDEEDEHLVKVHLDEDERLAKIQQEEEERLAKIQQEDEHLAKIQQEEEERLAKIQQEDECLAKIQQEDERLAKAQLEEDEQLARAIQESLKIGSPPQYDNGSSILSFPHLFPPGYRICAGCKTEIGQGRFLSCMGGVWHPECFCCHACHLPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTSRCCSCERMEPRDTKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPRIAAGYRAIDMITEPYRLIRCCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGFGNDGASSSTSSLSSSSPSSSSVSTKKGKRSDFEKKLGDFFKHQIESDTSSAYGDGFRLGNQAMVKYGLKRTLDHIHMTGSFPY* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0531 570 MobiDBLite consensus disorder prediction 495 514 - -
Gso11g0531 570 Gene3D Cysteine Rich Protein 194 258 - -
Gso11g0531 570 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 227 283 - -
Gso11g0531 570 SMART uim 43 62 IPR003903 -
Gso11g0531 570 SMART uim 159 178 IPR003903 -
Gso11g0531 570 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 159 178 IPR003903 -
Gso11g0531 570 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 128 - -
Gso11g0531 570 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 117 570 - -
Gso11g0531 570 MobiDBLite consensus disorder prediction 495 512 - -
Gso11g0531 570 PANTHER PROTEIN DA1-RELATED 2 117 570 IPR045218 -
Gso11g0531 570 PANTHER PROTEIN DA1-RELATED 2 1 128 IPR045218 -
Gso11g0531 570 Pfam LIM domain 200 255 IPR001781 -
Gso11g0531 570 Pfam Protein DA1 349 565 IPR022087 -
Gso11g0531 570 Coils Coil 139 166 - -
Gso11g0531 570 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 192 225 - -
Gso11g0531 570 CDD LIM_DA1 200 252 - -
Gso11g0531 570 SMART lim_4 199 251 IPR001781 -
Gso11g0531 570 ProSitePatterns LIM zinc-binding domain signature. 200 234 IPR001781 -
Gso11g0531 570 ProSiteProfiles LIM domain profile. 198 258 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0531 Gso-Chr11 4765654 4772170 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso11g0531 DA1-like 2e-102 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0531 - - gmx:100778105 1140.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0531 11 4765654 4772170 Gso11g0531 11 4765654 4772170 ECH
Gso1g1544 1 52097677 52105394 Gso11g0531 11 4765654 4772170 GST
Gso11g0531 11 4765654 4772170 Gso2g0502 2 5301557 5307911 PCT
Gso11g0531 11 4765654 4772170 Gso16g1144 16 30409024 30415333 PCT
Gso2g0502 2 5301557 5307911 Gso11g0531 11 4765654 4772170 PCT
Gso16g1144 16 30409024 30415333 Gso11g0531 11 4765654 4772170 PCT