Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0530 ATGTCCCAAGATTTTCAACAAGGAATCTTCAGCTTCCCGAATGGGTTGGAGAGAGGAAGGCTAGTGAGTCCGCAGCAACAGATCCGGAGGGACAAAGTAAGGTTCGAGGCGGCGGCGCCATTGGTAGGGATAGAGGAGGAGGAACCGGTGTACGAGACCGCCGGGATGTTGTCGGAGATGTTTAATTTTCCGCCCGCGACGGAATTGTTGGAGCAGCAGCACGCGACGGCGACGTTCCGGGCGGCGAGGCAAGCCGGAGAGTGGTACGGAAACAGACAGCAACAGCAACAGATTTCAGGCATTAATGCTGACTCAGCAGCAGCCATGCAACTTTTTCTGATGAACCCTCAAACGAGGTCTCCTTCTCCTCCTCAAACCCACGCCACTCCTTCGTCAACGCTTCACATGCTGCTTCCAAATCCTTCTTCAAATTCTTCCCTCCAAGGATTTACTGGTTCGGCCGCGGGAGGGTCTTTTGGTCAATTCACATGGGTTCCTGAGAGTGCTCATCAACAAGGAGGCGTGGTGGAAGGGCAAGGTCTTTCGTTATCGTTGTCTTCTTCGCTGGAAGCAGCAAAAGCCGAGGAACTGAGGATGGGGGATAGTGGTTTTCTATATTACAATCATCAACAAGGTGGAGGTGGAGGAGGTGGTTCTTCTTCTTCTTCCGCGGTTCAGTTTCAGTACAAGAATAATAACAATAACCATCACCAAGCATTGCATTTGCAAGGGGCGATGGGACACGACAACAACCACCAGGGACATGTTGGGTTTGGGTCATCCTCGTTAGGTGTAGTTAATGTTCTAAGAAATTCAAAGTATGCGAAGGCTGCACAAGAGTTGCTGGAAGAGTTTTGCAGTGTAGGGAGGGGTCAGTTTAAGAAGAGCAAGTTCAATAGGCAGAATTCAAACCCTAATTCAAATGCCGGTGGTGGTGCTTCGCCTTCATCAAAAGATGCTCCTCCTCCTCCTCCTTTGTCAGCCGCTGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTACTATCAATGCTTGACGAGGTGGACAGGAGATACAACCATTACTGCGAGCAAATGCAGATGGTAGTGAACTCATTTGACCTGATGATGGGTTTTGGGGCGGCAGTGCCGTACACAGCACTAGCGCAGAAAGCAATGTCTCGGCATTTCCGGTGTCTGAAGGAGGCGATAACAGCGCAGCTGAAGCAAAGTTGTGAGGTACTAGGAGAGAAAGATGGAGCGGGGAACTCAGGAGGTTTGACCAAGGGTGAGACCCCAAGGCTTAAGATGTTAGAACAAAGCCTAAGACAGCAGAGAGCCTTCCACCAGATGGGCATGATGGAACAAGAAGCTTGGAGACCCCAGAGAGGCTTGCCTGAACGTTCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTTCTCCACCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGCCTATCGCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAAATGTACCAACAAGAACTTAAAGAAGCAGAGAGTGCAGAAGACAGAGAAAACAACAACAGCAACATTAGTGGCAACCAAGCACAAACTCCAACCACACCATCAGCGGCCACAACATCAACAGCAACAGCGCCACCACCACCACCACCAACGACAACAGCAACAAAACCGACAGGCAAAAGATCCGATGCCATCAATGCCCCCGATAGCGACCCTTCACAGCATGTTGCAATGAATAATAGACAAGGCTTCTCGGAAAACCAAGCAAAGAAGTCCACCGCATCCACCACCGCCACCACCACCACCGCCGCCGCCTCTGAGGTGGCGCCACCCGTGTCTCAGTGCTTCGACTCAGACCTGCCCCCACACAGATTAATGGCCTCTAATGACAACACGTGTCGCTTGGTCACAGCAGATTTTGGGACCGCATCTGCAAGTGCTGACATTGGATCCACACTCATTAGGTTTGGGACCACACCCGGTGACGTGTCACTCACCCTAGGGCTTCGCCACGCCGGGAACATGCCCTCTGAGAAAACTCCTTTCTCTGTTAGAGAATTTGGAGCCATTTAA 2118 0.509 MSQDFQQGIFSFPNGLERGRLVSPQQQIRRDKVRFEAAAPLVGIEEEEPVYETAGMLSEMFNFPPATELLEQQHATATFRAARQAGEWYGNRQQQQQISGINADSAAAMQLFLMNPQTRSPSPPQTHATPSSTLHMLLPNPSSNSSLQGFTGSAAGGSFGQFTWVPESAHQQGGVVEGQGLSLSLSSSLEAAKAEELRMGDSGFLYYNHQQGGGGGGGSSSSSAVQFQYKNNNNNHHQALHLQGAMGHDNNHQGHVGFGSSSLGVVNVLRNSKYAKAAQELLEEFCSVGRGQFKKSKFNRQNSNPNSNAGGGASPSSKDAPPPPPLSAADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKEAITAQLKQSCEVLGEKDGAGNSGGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELKEAESAEDRENNNSNISGNQAQTPTTPSAATTSTATAPPPPPPTTTATKPTGKRSDAINAPDSDPSQHVAMNNRQGFSENQAKKSTASTTATTTTAAASEVAPPVSQCFDSDLPPHRLMASNDNTCRLVTADFGTASASADIGSTLIRFGTTPGDVSLTLGLRHAGNMPSEKTPFSVREFGAI* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0530 705 MobiDBLite consensus disorder prediction 296 314 - -
Gso11g0530 705 SMART prehox3 263 399 IPR006563 -
Gso11g0530 705 ProSiteProfiles 'Homeobox' domain profile. 449 512 IPR001356 GO:0003677
Gso11g0530 705 Pfam Homeobox KN domain 469 508 IPR008422 GO:0003677|GO:0006355
Gso11g0530 705 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 45 693 - -
Gso11g0530 705 Gene3D - 455 517 - -
Gso11g0530 705 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 45 693 - -
Gso11g0530 705 MobiDBLite consensus disorder prediction 296 333 - -
Gso11g0530 705 MobiDBLite consensus disorder prediction 522 620 - -
Gso11g0530 705 MobiDBLite consensus disorder prediction 532 555 - -
Gso11g0530 705 CDD homeodomain 452 513 IPR001356 GO:0003677
Gso11g0530 705 Pfam Associated with HOX 268 398 IPR006563 -
Gso11g0530 705 SMART HOX_1 452 516 IPR001356 GO:0003677
Gso11g0530 705 SUPERFAMILY Homeodomain-like 453 519 IPR009057 -
Gso11g0530 705 Coils Coil 515 535 - -
Gso11g0530 705 MobiDBLite consensus disorder prediction 582 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0530 Gso-Chr11 4740128 4748287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0530 1 499 Homeobox Transcription Factor Family AT4G36870 53.237 6.15e-152 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso11g0530 POX 5.2e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0530 - - gmx:100777243 1212.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0530 11 4740128 4748287 Gso11g0530 11 4740128 4748287 ECH
Gso1g1545 1 52129796 52137213 Gso11g0530 11 4740128 4748287 GST
Gso11g0530 11 4740128 4748287 Gso2g0503 2 5347053 5355693 PCT
Gso11g0530 11 4740128 4748287 Gso16g1145 16 30468856 30477325 PCT
Gso2g0503 2 5347053 5355693 Gso11g0530 11 4740128 4748287 PCT
Gso16g1145 16 30468856 30477325 Gso11g0530 11 4740128 4748287 PCT