Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0504 ATGGATCGGCCGGCGACCGGACCTGGCGTGGACATGCCGATCATGCACGATAGCGACCGCTACGATTTCGTTCGCGATATCGGCTCCGGGAATTTCGGCGTCGCAAGGCTTATGAGGGATAAGCAGACGCAAGAGCTTGTTGCTGTTAAGTATATTGAACGCGGAGATAAGATTGATGAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATCCTAACATTATCAGGTTTAAGGAGGTCATTTTAACACCTACTCATCTGGCCATTGTAATGGAATATGCATCTGGTGGAGAGCTATTTGAGAAAATCTGCAATGCAGGGCATTTTAATGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTACTGTCATGCAATGGAAGTGTGTCACCGGGACCTGAAGTTGGAAAACACTTTGTTGGATGGAAGCCCGGCACTTCATTTGAAGATATGTGATTTTGGATACTCCAAGTCTTCGGTGCTTCATTCACAACCTAAGTCAACTGTGGGAACTCCAGCATATATTGCTCCAGAAGTATTGCTGAAGCAAGAGTATGATGGCAAGATTGCAGATGTCTGGTCATGTGGAGTAACCTTGTTTGTGATGCTAGTGGGATCATATCCTTTTGAAGATCCTAATGATCCAAAGGATTTCCGGAAGACAATTCAGAGGGTTCTCAGTGTCCAGTATTCCATTCCAGACAATGTTCAAGTTTCTCCTGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGTTTTTTGCATATTTCCGATGGAACATTGTTGTACCTCGTCCTCTTCTATGCTGCAATGCAAGTCACGAAGCTGTGAATGCTACTAAAAAGGATGTGATAAGATTATACAATACTAGAATGGGGTGGACGGCCTTAGGATTCTACAATAATGTGATTCATCTCGTTGTATGTGGGGTATATATATTTTGA 981 0.4322 MDRPATGPGVDMPIMHDSDRYDFVRDIGSGNFGVARLMRDKQTQELVAVKYIERGDKIDENVKREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFEKICNAGHFNEDEARFFFQQLISGVSYCHAMEVCHRDLKLENTLLDGSPALHLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKIADVWSCGVTLFVMLVGSYPFEDPNDPKDFRKTIQRVLSVQYSIPDNVQVSPECRHLISRIFVFDPAEFFAYFRWNIVVPRPLLCCNASHEAVNATKKDVIRLYNTRMGWTALGFYNNVIHLVVCGVYIF* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0504 326 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 13 265 - -
Gso11g0504 326 Pfam Protein kinase domain 21 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0504 326 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
Gso11g0504 326 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Gso11g0504 326 SMART serkin_6 21 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0504 326 PANTHER SERINE/THREONINE KINASE 13 265 - -
Gso11g0504 326 SUPERFAMILY Protein kinase-like (PK-like) 14 283 IPR011009 -
Gso11g0504 326 ProSiteProfiles Protein kinase domain profile. 21 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0504 326 Gene3D Transferase(Phosphotransferase) domain 1 97 273 - -
Gso11g0504 326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0504 Gso-Chr11 4491833 4498470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0504 20 276 CBL-interacting serine-threonine protein kinases AT5G25110 42.029 9.18e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Gso11g0504 Pkinase 3.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0504 K14498 - gmx:100788440 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1574 1 52388155 52397481 Gso11g0504 11 4491833 4498470 GST
Gso17g1513 17 19623055 19628087 Gso11g0504 11 4491833 4498470 PCT