Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0500 ATGGAGCTGAGTTTGGATTTGAGTTTAGGCTTTGTTCCCAAACCTCTTTCCCTGTTTTTCGCCGACGTTTCTGCGAACAGAGACAAAGTGGCCACACTCGATGGCTTCGTGCAGAGATTGGAGGAAGAATTGAAAAAGGTCGAGGCTTTCAAACGTGAGCTTCCTCTCTGCATTCTTCTCCTAAACGATGCTATAGCTAGATTGAAGGAGGAAAAAGTGAAGTGTTCGGGAATGCAAGATCCGCCACTGAAAACCAGTTCTGGAGGAAACAAAAATGAAAGCTCTGAGAAGATGAATTGGATGAGTTCAGCGCAGCTTTGGAGCACTCAGAAAACCAAATCGAGAAATGAGGAAGATGATAGGTCTGTGCCAGCGAACCCAATTAATGGGAATTCGTGTGTCCTCGAGAAGGAGGGTTCCCAAGTTCCGAGGTTTGGTTTGATGGCTCGTGCTTCTGAACTGAGTCATAGCAATTCCAAGAGTGTTGGTGGAGATATTAGTTCTGGCTCCTCTTTGCTCCGTGTTGAGGTACAGAGTCAGCCACAACCGCCGCAACATATGCAACAGAATCCGAGGAAACAACGCCGCTGCTGGTCGCCGGAGCTTCACCGCCGCTTTGTGGACGCTCTTCAACAACTTGGTGGAGCACAAGTGGCCACTCCTAAACAGATTAGAGAACTGATGCAGGTGGAAGGCCTTACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGGCTTCACGTTAGGAGATTTCCAGTTTCTTCAACTGGCCAGGCTGATAATGGGTCATGGATGTCACAAGATGAATCTGGGGATAAATCAAAGGGAAACAACATGTCACAGTCTGGTTCTCCACAAGGTCCTCTCACACCTCTGATCCTAGGAGGAGGAGGAGGAGGATCTGCTAAGGGTCTCTCAAGCCCTGGACAGAACAGTGTGGATGGAGAAGATGAGCAATCTGATTGCCGGAATTGGAAAGGAGGGCTCCACCACCACCAGCTTGAAGCTGATAATCAATGCCTCTAA 1029 0.4801 MELSLDLSLGFVPKPLSLFFADVSANRDKVATLDGFVQRLEEELKKVEAFKRELPLCILLLNDAIARLKEEKVKCSGMQDPPLKTSSGGNKNESSEKMNWMSSAQLWSTQKTKSRNEEDDRSVPANPINGNSCVLEKEGSQVPRFGLMARASELSHSNSKSVGGDISSGSSLLRVEVQSQPQPPQHMQQNPRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMQVEGLTNDEVKSHLQKYRLHVRRFPVSSTGQADNGSWMSQDESGDKSKGNNMSQSGSPQGPLTPLILGGGGGGSAKGLSSPGQNSVDGEDEQSDCRNWKGGLHHHQLEADNQCL* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0500 342 SUPERFAMILY Homeodomain-like 191 251 IPR009057 -
Gso11g0500 342 Coils Coil 33 53 - -
Gso11g0500 342 MobiDBLite consensus disorder prediction 177 196 - -
Gso11g0500 342 MobiDBLite consensus disorder prediction 80 111 - -
Gso11g0500 342 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 338 - -
Gso11g0500 342 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 193 248 IPR006447 GO:0003677
Gso11g0500 342 MobiDBLite consensus disorder prediction 75 133 - -
Gso11g0500 342 MobiDBLite consensus disorder prediction 255 289 - -
Gso11g0500 342 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 338 IPR044787 GO:0003700|GO:0006355
Gso11g0500 342 Pfam Myb-like DNA-binding domain 195 246 IPR001005 -
Gso11g0500 342 MobiDBLite consensus disorder prediction 317 334 - -
Gso11g0500 342 MobiDBLite consensus disorder prediction 177 195 - -
Gso11g0500 342 MobiDBLite consensus disorder prediction 255 342 - -
Gso11g0500 342 Gene3D - 192 249 - -
Gso11g0500 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 190 250 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0500 Gso-Chr11 4460240 4462356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0500 1 243 G2-like Transcription Factor Family AT4G37180 42.105 3.81e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso11g0500 Myb_DNA-binding 1.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0500 - - gmx:100817326 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1576 1 52423221 52425441 Gso11g0500 11 4460240 4462356 GST
Gso17g1510 17 19520200 19523304 Gso11g0500 11 4460240 4462356 PCT