Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0498 ATGTCATCATCATCGAATTCGCCGTGCGCGGCGTGCAAGTTTCTGAGGCGAAAGTGCACACAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAATCCTCAGAGGTTCGCTTACGTACACAAGGTTTTCGGCGCCAGCAACGTGGCGAAGCTGCTCAACGAGCTCAGTGCGGCGCAGCGAGACGACGCCGTTAAGTCCCTCGCGTACGAGGCCGAGGCTCGTCTCCGGGACCCCGTCTACGGCTGCGTGGGCCTCATCTCCGTCCTCCAGCACAAGCTCCGGCAGATCCAGGTCGAACTCAGCAATGCAAAGAAAGAACTCGCAAATTATATTGGTCCCCAAGCACTACAAGGAATTCCCGCTCCCATGCTCCAACAACACCCTAACAACCCTTTTCCCGGTGCCATGTATGGGAACATGCCGACTGCGACGGCCTCCGTTCACGGCGGGCAGTTGGTGATTCGCGACGCGCAGCCGGTGCCTCACCACCACCACCATCACCAGCAGCAGATCTTGGAGGCGCAACAGTTGGCTGCTGCTGTGGCGGCGAGGGAACAGCAAGAGATGTTCAGAAGTTATGAACACCAACAGCAGCAGGAGTTTCTACGGTTCAGTGGTGGTGGGTTCGATATGGGTTCGGCTTCTTCTGCTGGTGGGTTCAGCCAGGTGTCCCCAGCTGCTGGTTCTGCTGATCAGTTGTCTCCTTCTTTGGCTTTGGGATCATTCGATAACGCTTACCACATGCAACAGCAACCACAGCAAGGGGAACCTCACCACCATCATCATCCTCATCACATTCCTCTTGCGGCTCAGCTACTTCTCCCTCCGCAGCAGAAGCAACAAACCCATCATGAGTCACAACTTCCCCTTCACCGGCAACATTCTGAGAGCGAGGAGTGTAGGAGTGTTGGTCCATCTTGTTGA 927 0.5653 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQIQVELSNAKKELANYIGPQALQGIPAPMLQQHPNNPFPGAMYGNMPTATASVHGGQLVIRDAQPVPHHHHHHQQQILEAQQLAAAVAAREQQEMFRSYEHQQQQEFLRFSGGGFDMGSASSAGGFSQVSPAAGSADQLSPSLALGSFDNAYHMQQQPQQGEPHHHHHPHHIPLAAQLLLPPQQKQQTHHESQLPLHRQHSESEECRSVGPSC* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0498 308 Coils Coil 87 107 - -
Gso11g0498 308 MobiDBLite consensus disorder prediction 286 300 - -
Gso11g0498 308 MobiDBLite consensus disorder prediction 278 308 - -
Gso11g0498 308 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 286 - -
Gso11g0498 308 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Gso11g0498 308 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Gso11g0498 308 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 3 286 - -
Gso11g0498 308 MobiDBLite consensus disorder prediction 217 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0498 Gso-Chr11 4444500 4448314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0498 3 235 AS2 family AT5G66870 56.225 7.84e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso11g0498 LOB 9.6e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0498 - - gmx:100816778 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1578 1 52439644 52443432 Gso11g0498 11 4444500 4448314 GST
Gso17g1508 17 19475824 19476399 Gso11g0498 11 4444500 4448314 PCT