Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0496 ATGAATATTAGGATTGGTGTGGGAGGATTTGGTAGCTTTGTTTTTGCGAGGCAAGAGGCAGTGAAAAGTGTGGAGCAGGCGGAGACAAGCAGTCAAGGAGATGGGTGCTGGTTCCCTGCAAGAAGTGCTCCAACGAGTCCTTTCGCCAGTCCGAAAACTTGCATTAAGAAAAACGATGATTTTGTTCCATACCATTACGTCTCACCCAAAGGAAACCAGTTCTGGTCAGCACCAGAGATGCCCACATTCGACACTTCCCACCCACCTCCCGCTTTCTTTGATTTATCAGCATTACGCACCGATAAAATTCTTTCTCCCCACCAAAGCCCACCCGGAAAAAGCCTCGCTGCCCCACATCCAAAAAGCCCAACTGGCCCTTCTTCTTCTCTATCCATCCCCCCCAGGTTATCCCTTGACACCTCCATAGCACGTCGTGAAACCAATGCTCTTCTCACTGTTCACCCCTTACCTTTGCCTCCTTGGGCTGGGCCTGGGGCCCCCATGCTTTCCCCATCTTCTTCTACCTTTTCCCCTCCCTTGGCTAAGACTGAACCCATGCCCATGAAAAACCAGTGGCAAAAAGGGAAACTTCTTGGCCGTGGTACTTTTGGAACTGTTTATGCTGCCACCAATAGAAAAACTGGAGCATTGTGTGCAATGAAGGAAGCGGAAATATTTTCTGATGATCCAAAGTCTGCAGAGTGCATAAAGCAGTTAGAGCAGGAAATTAAAGTTCTTAGCCATCTGCAACATCCAAACATTGTGCAGTATTATGGTAGCGAAATAGTAGAAGACAGGTTTTATATTTATTTGGAATATGTCCATCCCGGTTCAATGAATAAATATGTTCGTGAACATTGTGGTGCAATAACAGAATGTGTTGTTCGGAATTTCACGCGCCATATTCTATCAGGCTTGGCTTACTTGCATAGCAAAAAAACAATTCATAGGGACATCAAAGGAGCTAACTTGCTAGTTGATTCTGCTGGTGTTGTTAAGCTTGCTGACTTTGGGATGGCCAAGCACCTAACTGGACATGTTGCAGATCTTTCTTTGAAGGGAAGTCCATATTGGATGGCTCCAGAGCTTTTTCAAGCGGTTGTGCAAAAAGATAACAGCTCTGACCTTGCTTTCGCTGTTGATATTTGGAGTTTGGGTTGTACAATTATTGAAATGTTCACGGGGAAGCCTCCTTGGAGTGAGTACGAAGGAGCCGCAGCTATGTTTAAGGTTATGAAGGATACCCCTCCTATACCAGAAACATTGTCAGCAGAGGGTAAAGATTTCCTAAGACTTTGCTTTATAAGAAATCCAGCAGAGCGACCAACTGCTTCAATGTTATTAGAACATCGATTTCTGAAAAACTTGCAACAGCCAGATGTTTCATCTTCCATGCAGCTGTATAATGGAACAAACTTGATGGATATCCATAGTCCCAGTGAGTTGTCTGAAAATAAACTTGATCAAATTTCTATTCAAAGTGCACATATTCCTAAATGA 1500 0.442 MNIRIGVGGFGSFVFARQEAVKSVEQAETSSQGDGCWFPARSAPTSPFASPKTCIKKNDDFVPYHYVSPKGNQFWSAPEMPTFDTSHPPPAFFDLSALRTDKILSPHQSPPGKSLAAPHPKSPTGPSSSLSIPPRLSLDTSIARRETNALLTVHPLPLPPWAGPGAPMLSPSSSTFSPPLAKTEPMPMKNQWQKGKLLGRGTFGTVYAATNRKTGALCAMKEAEIFSDDPKSAECIKQLEQEIKVLSHLQHPNIVQYYGSEIVEDRFYIYLEYVHPGSMNKYVREHCGAITECVVRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSAGVVKLADFGMAKHLTGHVADLSLKGSPYWMAPELFQAVVQKDNSSDLAFAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMKDTPPIPETLSAEGKDFLRLCFIRNPAERPTASMLLEHRFLKNLQQPDVSSSMQLYNGTNLMDIHSPSELSENKLDQISIQSAHIPK* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0496 499 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 22 495 - -
Gso11g0496 499 ProSitePatterns Protein kinases ATP-binding region signature. 198 221 IPR017441 GO:0005524
Gso11g0496 499 SUPERFAMILY Protein kinase-like (PK-like) 174 475 IPR011009 -
Gso11g0496 499 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 22 495 - -
Gso11g0496 499 MobiDBLite consensus disorder prediction 103 135 - -
Gso11g0496 499 Gene3D Transferase(Phosphotransferase) domain 1 188 495 - -
Gso11g0496 499 MobiDBLite consensus disorder prediction 168 187 - -
Gso11g0496 499 Pfam Protein kinase domain 193 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0496 499 MobiDBLite consensus disorder prediction 121 135 - -
Gso11g0496 499 ProSiteProfiles Protein kinase domain profile. 192 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0496 499 SMART serkin_6 192 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0496 Gso-Chr11 4427329 4431410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0496 8 490 MAP Kinase Kinase Kinase AT5G66850 61.905 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso11g0496 Pkinase 1.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0496 - - gmx:100816259 999.579
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1580 1 52462959 52466851 Gso11g0496 11 4427329 4431410 GST
Gso11g0496 11 4427329 4431410 Gso17g1505 17 19349253 19354790 PCT
Gso17g1505 17 19349253 19354790 Gso11g0496 11 4427329 4431410 PCT