Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0484 ATGTTGCAACAACGATCGGTGCCGGCACCGTTCTTGACGAAGACGTATCAGTTGGTGGAGGATCCGGGGACGGACGAGGTAATATCGTGGGGTGAAAGTGGGAACACTTTTGTGGTGTGGAAGCATGCGGATTTTGCAAAGGATTTGCTTCCAAAATATTTCAAGCACAACAACTTCTCCAGCTTTGTTCGACAGCTCAACACCTATGGATTTCGAAAAATTGTGCCAGACAAATGGGAATTCGCGAACGAACACTTCAAGCGAGGGCAGAAGGAGCTTCTCTCGGAGATCAAACGCCGCAAGACCGTGCCTCAGTCGTCGACACATTCCCCGGATGCCGGAAAACCCGGCGCCGAAGGCAACTCTCCGTCGAACCCCGGCGGCTGCGACGACGCGGGCTCCACCTCAACCTCGTCCTCGTCCTCCGGTTCCAAGAACCAGGGATCGGTGGAAACAAACACAACGCCTTCTCACCAGTTATCGAGCGAGAACGAGAAACTGAAGAAGGATAACGAAACGCTGAGTTGCGAGCTGGCACGTGCGAGGAAGCAGTGCGATGAGCTCGTGGCTTTTCTCAGGGACCGTCTGATGGTGGGTCCCGATCAGATCGATCGCATCATGCGGCAAGGAAGTTGCGGATCTGAAAACGCGGTAGGTGAAGGCGGTGGTGGAGGACACTGTTTGAAACTGTTTGGTGTTTGGTTAAAAGGGGATACACTAACAGACAAAAGAAACAACCACAAGAGAGGCCGCGAAGACCAAATGGGCTTCGGTGGGCCTCGCCTCAAGGAGTCAAAGCCCGTTGTTGACTTTAGTAGGAATAGGATGATGATGATTAATGAAAAAGGAAAAGGCTAA 858 0.5233 MLQQRSVPAPFLTKTYQLVEDPGTDEVISWGESGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGQKELLSEIKRRKTVPQSSTHSPDAGKPGAEGNSPSNPGGCDDAGSTSTSSSSSGSKNQGSVETNTTPSHQLSSENEKLKKDNETLSCELARARKQCDELVAFLRDRLMVGPDQIDRIMRQGSCGSENAVGEGGGGGHCLKLFGVWLKGDTLTDKRNNHKRGREDQMGFGGPRLKESKPVVDFSRNRMMMINEKGKG* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0484 285 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 3 275 - -
Gso11g0484 285 Coils Coil 157 184 - -
Gso11g0484 285 SMART hsfneu3 7 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g0484 285 PRINTS Heat shock factor (HSF) domain signature 11 34 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g0484 285 PRINTS Heat shock factor (HSF) domain signature 49 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g0484 285 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g0484 285 MobiDBLite consensus disorder prediction 95 170 - -
Gso11g0484 285 MobiDBLite consensus disorder prediction 244 259 - -
Gso11g0484 285 Pfam HSF-type DNA-binding 11 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g0484 285 MobiDBLite consensus disorder prediction 127 161 - -
Gso11g0484 285 ProSitePatterns HSF-type DNA-binding domain signature. 50 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g0484 285 MobiDBLite consensus disorder prediction 244 265 - -
Gso11g0484 285 Gene3D - 3 102 IPR036388 -
Gso11g0484 285 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 3 275 IPR027725 -
Gso11g0484 285 SUPERFAMILY "Winged helix" DNA-binding domain 8 100 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0484 Gso-Chr11 4289643 4291971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0484 4 271 HSF AT4G36990 53.191 1.60e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso11g0484 HSF_DNA-bind 3.8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0484 K09419 - gmx:100783832 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1595 1 52634177 52636373 Gso11g0484 11 4289643 4291971 GST
Gso11g0484 11 4289643 4291971 Gso17g1484 17 18450859 18454820 PCT
Gso17g1484 17 18450859 18454820 Gso11g0484 11 4289643 4291971 PCT