Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0478 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGGATTCCGTGGGATGTCGATACTGAGGGATTAAGGGAATATATGAGCAAGTTTGGTGAGCTGGAAGATTGCATTGTCATGAAGGAGCGGTCAACTGGACGGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGAAGTACTATCAAGTGAACATATTATTGGTAATAGGACGCTGGAAGTCAAAGTGGCAACACCAAAGGAGGAAATGAGGGCACCAGTCAAAAAAGTTACTAGAATATTTGTTGCCAGGATTCCACAATCAGTAACAGAAGCTACTTTCCGAAGTCATTTTGAGAAATATGGTGAAATAACAGATTTGTACATGCCAAAGGATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAGATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTGTGGTGGTTGATCGAGCTACTCCTAAGGATGATGACTTTAAGCCAATGGGCAGAATGCCGCCGCCGCCACCGCCACCGCCACAAGGAGGAGGATATGGTGCATACAATGCTTATATCTCAGCAGCCACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAATTTATGGAAGGGGAGATGCTCGGAGAACTAGTAAAAAAATTTTTGTCGGCCGTCTTCCCCCAGAAGCAACTTCTGATGATCTTCGCCAATATTTTGGAAGATTTGGTCGTATATTAGATGTTTATGTTCCAAGGGATCCTAAGAGAGCAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGCAGCAGATCGCGTCTCTCGAAGGTCTCATGAGATTTGTGGACATCCGGTGGCAATAGATTCGGCTACTCCTGTTGATGATGCAGGGCCCAGTGGGAATTTTATGATGAATAGTATGGAATCTTTTGGGGGATATGGTGGTCCTGTGCGATCTTATGGGAGGATGTATGGTAGCTTGGACTTTGATGATTGGGGTTATGGAATTGGGAGACCATCAAGAGCAGCAGATTGGAGGTATAGACCATACTAG 1098 0.4481 MEQRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSSEHIIGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEATFRSHFEKYGEITDLYMPKDQGSKMHRGIGFITFASADSVENLMSETHELGGSAVVVDRATPKDDDFKPMGRMPPPPPPPPQGGGYGAYNAYISAATRYAALGAPTLYDHPGPIYGRGDARRTSKKIFVGRLPPEATSDDLRQYFGRFGRILDVYVPRDPKRAGHRGFGFVTFAEDGAADRVSRRSHEICGHPVAIDSATPVDDAGPSGNFMMNSMESFGGYGGPVRSYGRMYGSLDFDDWGYGIGRPSRAADWRYRPY* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0478 365 PANTHER OS01G0945800 PROTEIN 3 365 - -
Gso11g0478 365 Gene3D - 1 87 IPR012677 -
Gso11g0478 365 Gene3D - 88 175 IPR012677 -
Gso11g0478 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Gso11g0478 365 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 365 - -
Gso11g0478 365 SUPERFAMILY RNA-binding domain, RBD 225 330 IPR035979 GO:0003676
Gso11g0478 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Gso11g0478 365 SUPERFAMILY RNA-binding domain, RBD 88 195 IPR035979 GO:0003676
Gso11g0478 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 307 IPR000504 GO:0003723
Gso11g0478 365 SMART rrm1_1 93 164 IPR000504 GO:0003723
Gso11g0478 365 SMART rrm1_1 232 303 IPR000504 GO:0003723
Gso11g0478 365 SMART rrm1_1 5 76 IPR000504 GO:0003723
Gso11g0478 365 MobiDBLite consensus disorder prediction 167 189 - -
Gso11g0478 365 Gene3D - 225 311 IPR012677 -
Gso11g0478 365 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Gso11g0478 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 288 IPR000504 GO:0003723
Gso11g0478 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 73 IPR000504 GO:0003723
Gso11g0478 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0478 Gso-Chr11 4229357 4233965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0478 6 280 Eukaryotic Initiation Factors Gene Family AT2G36660 22.022 1.08e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0478 K14411 - gmx:100808084 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1600 1 52696114 52700719 Gso11g0478 11 4229357 4233965 GST