Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0476 ATGGACGTGGACATACTGAAAACTTCCACGAGTGACAACATCAGCATGGACATGATGATGACGATGATGCAAATGGAAAAGTTCCCTGAATTTTGTGAACCTTTTTATAACAACAACAACAACACTAGTACTGCTCCTCTCTACCCAGAAAACGAGCTCTTAATAAACTCCACCACCACTCTACCCGTGTTCTCCAACGTTATTAACAACCCAAACGTTATAACTCCACCACCATCTTCCTCTAATTTTATTCAACAACAACCCATGACACCCCATCTTGAACCCAACTTGGAGAAGAGGAATTCTGTGGCGGCTATGAGGGAGATGATTTTCCGCGTAGCAGTGATGCAACCTATTCATATAGACCCTGAATCCATCAAGCCACCGAAGAGAAGGAACGTGAAGATTTCAAAAGATCCGCAGAGTGTGGCGGCGAGGCACAGAAGAGAAAGGATAAGCGAGAGAATAAGGATACTTCAGAGATTAGTTCCTGGTGGGACCAAAATGGACACGGCTTCTATGTTGGATGAAGCCATTCACTACGTGAAGTTCTTGAAGAAGCAAGTGCAGACGCTGGAACAAGCAGGGGCAAGTAGACCCTTGAATGTTGTTGGCTTCCCTACTACTGCGTCCAACGCCAATAATAATAATAGTTATTCTGGTTTTGTGAAGAGTTGTCAGCCTTATCCAATGCTGGGTTCTGCAGCTTCTAAACAATTGCTTAGTTGA 729 0.4403 MDVDILKTSTSDNISMDMMMTMMQMEKFPEFCEPFYNNNNNTSTAPLYPENELLINSTTTLPVFSNVINNPNVITPPPSSSNFIQQQPMTPHLEPNLEKRNSVAAMREMIFRVAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRPLNVVGFPTTASNANNNNSYSGFVKSCQPYPMLGSAASKQLLS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0476 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 195 IPR036638 GO:0046983
Gso11g0476 242 SMART finulus 142 191 IPR011598 GO:0046983
Gso11g0476 242 PANTHER TRANSCRIPTION FACTOR HEC2 1 227 - -
Gso11g0476 242 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 227 IPR045843 GO:0003700|GO:0006355
Gso11g0476 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Gso11g0476 242 Gene3D - 135 201 IPR036638 GO:0046983
Gso11g0476 242 Coils Coil 175 195 - -
Gso11g0476 242 CDD bHLH_AtIND_like 137 193 - -
Gso11g0476 242 Pfam Helix-loop-helix DNA-binding domain 146 185 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0476 Gso-Chr11 4204317 4205412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0476 25 194 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 61.828 2.26e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g0476 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0476 - - gmx:100805427 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1603 1 52719923 52720952 Gso11g0476 11 4204317 4205412 GST