Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0470 ATGGGTGACATGTACCACTTTGACAAGAACCTCTCCTCACAAGACGAAATCTCACTTTTTCTGCGTCAGATTCTGCTCCGTTCATCTTCACCTTCCCACTCCATGCCTGCTGGATCCTGCACCTCCAACGCTGCTCAACAAAACGTAAATGCACACCACCCTTCTTTCACGGCGTCACAGCTCCAAGATGGGAAGATCTTGGCCGTTGATTCCACCGCTTCTTTTGTCTCCGGTTCTGCTGCTTGCAGTTCCTTCAAGGGCCATGGTGCTTCTGCTGCAAATGTGTCTTCTTCTTCTGCTGGAGTGAGTGAGAACGAGAATGATGACTATGATTGTGAGAGTGAGGAGGGTGTTGAGGCTCCGGCCGAAGAAGTTCCAACAAAGGCTGCTTCTTCTAGGAGTTCATCTAAAAGATCAAGAGCTGCAGAAGTTCATAATTTGTCAGAGAAGCGGAGAAGGGGTAGGATCAACGAGAAAATGAAGGCTTTGCAAAACCTAATTCCAAATTCTAACAAGACAGATAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTACAAGTACAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCATCCTATGTGCTTTCCTGAAGGCTTGCAGCCTCTGCAGTTGTCTCAGATGGGTATGGAATTAAGTGAAAGAAACAGGTTTACCTCTTTAAACATGTCAGCTACTCTGCCTCTGCACCAAGACAACAATCCCTTGCACTATGCATCCAATCTACCTAACAAACACAATCTCCCAAATCAGCCATCTGTGCCCTATCCTCCATACATTGACAACCCAGAAACTTCTTTCGGTCTGGAACCCCGAATCCAAACGGATATGAAACCTCTTCAACACAAAGGAGGATCTTCTGAGCCAATACGAGGGGAAGACATTTTGCAGCACCAGCAATCAAGTGGTATCCATTCAGATGCCAATACATTAGGTGGTTCTCAAGTTGTCAAAGAATTCGAATCAGGCACGAGACTATCATTCCCTTTTGACACGCAAGCATGTGAACCCAAAGACAACAGCAACTCTTCGCAACCATGCATTGGCGGAAGAGATCATTCAGGAGTGATCATAAGAAATAGTGAGACCAACATTGTTGGTAGGTAG 1146 0.4555 MGDMYHFDKNLSSQDEISLFLRQILLRSSSPSHSMPAGSCTSNAAQQNVNAHHPSFTASQLQDGKILAVDSTASFVSGSAACSSFKGHGASAANVSSSSAGVSENENDDYDCESEEGVEAPAEEVPTKAASSRSSSKRSRAAEVHNLSEKRRRGRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCFPEGLQPLQLSQMGMELSERNRFTSLNMSATLPLHQDNNPLHYASNLPNKHNLPNQPSVPYPPYIDNPETSFGLEPRIQTDMKPLQHKGGSSEPIRGEDILQHQQSSGIHSDANTLGGSQVVKEFESGTRLSFPFDTQACEPKDNSNSSQPCIGGRDHSGVIIRNSETNIVGR* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0470 381 PANTHER TRANSCRIPTION FACTOR SPATULA 12 320 - -
Gso11g0470 381 Gene3D - 135 199 IPR036638 GO:0046983
Gso11g0470 381 MobiDBLite consensus disorder prediction 138 153 - -
Gso11g0470 381 MobiDBLite consensus disorder prediction 344 362 - -
Gso11g0470 381 MobiDBLite consensus disorder prediction 344 367 - -
Gso11g0470 381 CDD bHLH_AtPIF_like 143 202 - -
Gso11g0470 381 SMART finulus 146 195 IPR011598 GO:0046983
Gso11g0470 381 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 320 IPR031066 -
Gso11g0470 381 Coils Coil 179 199 - -
Gso11g0470 381 Pfam Helix-loop-helix DNA-binding domain 144 190 IPR011598 GO:0046983
Gso11g0470 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 200 IPR036638 GO:0046983
Gso11g0470 381 MobiDBLite consensus disorder prediction 106 120 - -
Gso11g0470 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Gso11g0470 381 MobiDBLite consensus disorder prediction 93 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0470 Gso-Chr11 4148941 4152363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0470 5 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 41.379 6.03e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g0470 HLH 6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0470 - - gmx:100793754 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1612 1 52787186 52790534 Gso11g0470 11 4148941 4152363 GST
Gso11g0470 11 4148941 4152363 Gso17g1463 17 17501283 17504937 PCT
Gso17g1463 17 17501283 17504937 Gso11g0470 11 4148941 4152363 PCT