Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0463 ATGTGGAATCTGAATGACTCTCCCGATCAGAGAAAGGACTATGAATCTGAAGGCTGTTCTTCTTCTCTGAATGATGATAAAGGCAAGAGAGTGGGATCTGCTTCCAATTCAAGCTCCTCTGCGGTGGTAGTTGAAGATGGATCGGAAGAAGAAGACAGTGAAAGAGGTGGAAGCAGAACATTGGACAAGAAAACCAACAAAATATTCGGCTTTGCGGTAGCCCATGATGACAGTGACCACCCACCCGTGACCCATCAGTTTTTTCCTGTTGAGGACTCCGAACTGCCTGTCTCCGCCGCCGCCGCAGGCAGTGGAGGCGGTGGCGGCGGAAGCTCCTTCCCACGTGCTCACTGGGTAGGTGTCAAATTTTGTCAATCGGAAACACCCGGCGCCGGAAAAGCAGTGAAAGTGTCGGAGCCGATGAAGAAAAGTCGCCGAGGACCACGCTCGCGTAGCTCACAGTATCGAGGAGTTACTTTCTACAGAAGAACTGGTAGATGGGAATCTCATATATGGGATTGTGGAAAGCAAGTGTATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCGTATGATAGAGCAGCTATTAAATTCCGGGGAGTGGAGGCAGACATCAACTTCAACATCGAAGACTATGAGGAAGACTTGAAGCAGATGACCAATTTAACCAAGGAAGAGTTTGTCCACGTACTTCGCCGACAAAGCACTGGATTTCCCAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTTTGGGCAAAAAGTATGTTTATCTGGGTCTGTTTGACACCGAAATTGAAGCTGCAAGGGCATATGATAAAGCAGCAATAAAATGTAATGGCAAGGAGGCTGTCACCAATTTTGATCCTAGCATCTATGATAGTGAGCTTAATTCTGAATCCTCAGGAGGTGTAGCTGCAGATCACAATTTGGATTTGAGTTTGGGCAATTCCAGCTCTAAACATAACAATAGTCAAACATCGGGGAATCACTTCGCAAATTCTGCAACCGATCAGCATATGCCACCTGAATCTAATTGGCGGAATGGGGGAAGCAAGCCTAAGGTTCATCTGGTAAATATACTTCCAAAACCATGTGGTAGAAGCAACATAGAAGCCTATGGGCACGGTGAGAGTGAAACCTTGAGGTTGCTAAGCCAAACTCACCTTCAATCCCCTACCAATAAAGAAATGCACAGATATGGTCCGTATAGGTCGCCAGCAGAGCCACAAAAGCCTCACAATTTTGCACATCATCTTCACCAACCAAGTTTTCATGTTCCTAGCAGCAGCAGCAATGGAGGCCGTATTGGAAGCGATCTTTCGTTATCAATGTCCGATCAACAACAATGGCAAGCCGGGCCTCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACAGCAAATTAGACCCTCCCAAGGTTGGCTGCAGAAAAATGGGTTCCACTCTCTCATGAGACCCTCATGA 1518 0.4717 MWNLNDSPDQRKDYESEGCSSSLNDDKGKRVGSASNSSSSAVVVEDGSEEEDSERGGSRTLDKKTNKIFGFAVAHDDSDHPPVTHQFFPVEDSELPVSAAAAGSGGGGGGSSFPRAHWVGVKFCQSETPGAGKAVKVSEPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDSELNSESSGGVAADHNLDLSLGNSSSKHNNSQTSGNHFANSATDQHMPPESNWRNGGSKPKVHLVNILPKPCGRSNIEAYGHGESETLRLLSQTHLQSPTNKEMHRYGPYRSPAEPQKPHNFAHHLHQPSFHVPSSSSNGGRIGSDLSLSMSDQQQWQAGPPHLLATAAASSGFPQQIRPSQGWLQKNGFHSLMRPS* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0463 505 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 503 - -
Gso11g0463 505 MobiDBLite consensus disorder prediction 8 24 - -
Gso11g0463 505 MobiDBLite consensus disorder prediction 438 466 - -
Gso11g0463 505 SUPERFAMILY DNA-binding domain 153 211 IPR016177 GO:0003677
Gso11g0463 505 MobiDBLite consensus disorder prediction 326 360 - -
Gso11g0463 505 ProSiteProfiles AP2/ERF domain profile. 154 210 IPR001471 GO:0003700|GO:0006355
Gso11g0463 505 MobiDBLite consensus disorder prediction 26 44 - -
Gso11g0463 505 ProSiteProfiles AP2/ERF domain profile. 246 303 IPR001471 GO:0003700|GO:0006355
Gso11g0463 505 PRINTS Ethylene responsive element binding protein signature 247 258 IPR001471 GO:0003700|GO:0006355
Gso11g0463 505 PRINTS Ethylene responsive element binding protein signature 285 305 IPR001471 GO:0003700|GO:0006355
Gso11g0463 505 SUPERFAMILY DNA-binding domain 245 305 IPR016177 GO:0003677
Gso11g0463 505 Gene3D AP2/ERF domain 153 212 IPR036955 GO:0003700|GO:0006355
Gso11g0463 505 Gene3D AP2/ERF domain 245 304 IPR036955 GO:0003700|GO:0006355
Gso11g0463 505 MobiDBLite consensus disorder prediction 313 367 - -
Gso11g0463 505 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 503 - -
Gso11g0463 505 SMART rav1_2 154 216 IPR001471 GO:0003700|GO:0006355
Gso11g0463 505 SMART rav1_2 246 309 IPR001471 GO:0003700|GO:0006355
Gso11g0463 505 CDD AP2 154 211 IPR001471 GO:0003700|GO:0006355
Gso11g0463 505 MobiDBLite consensus disorder prediction 428 466 - -
Gso11g0463 505 Pfam AP2 domain 154 202 IPR001471 GO:0003700|GO:0006355
Gso11g0463 505 Pfam AP2 domain 245 294 IPR001471 GO:0003700|GO:0006355
Gso11g0463 505 CDD AP2 245 305 IPR001471 GO:0003700|GO:0006355
Gso11g0463 505 MobiDBLite consensus disorder prediction 130 154 - -
Gso11g0463 505 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0463 Gso-Chr11 4083474 4087107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0463 1 340 AP2-EREBP Transcription Factor Family AT4G36920 69.774 1.50e-141 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Gso11g0463 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0463 K09284 - gmx:100786333 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1619 1 52856504 52860158 Gso11g0463 11 4083474 4087107 GST
Gso11g0463 11 4083474 4087107 Gso17g1438 17 15953876 15958016 PCT
Gso17g1438 17 15953876 15958016 Gso11g0463 11 4083474 4087107 PCT