Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0461 ATGGAGGGTGAAGGAAGAAGAAGAGAAGGAGGAGAGAGAGAAACAGCAACAGCAGCAGCAACGAGGAAGGTGGTGGAGGGTGCTGATCAGAGAAGATACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAAATTAGAGAACCCAATAAGCGTTCAAGGATTTGGCTCGGTTCCTATTCTACCCCTGTCGCAGCCGCACGTGCCTACGACACCGCCGTCTTTTACCTTCGAGGACCCTCCGCGCGTCTTAACTTCCCGGAGCTTCTCATCGGAGAAGGCGCCGCCGCCCTCACCGGCGGCTGTGACATGTCAGCAGCTTCTATTAGGAAGAAGGCCTCCGAGGTCGGTGCTAGAGTCGATGCTCTTCAGGCAACCCTTCACCACCATCACCACCATGTTGTGCCACCACGGCAGCTTCTCTCTGCCAGCTGTGGCGGTGGGTCCGGTGATTTTGCAGTGCGGGTTGTTGACCTGAATAAGATGCCCGAACCCGAGAGCTCCGACTGTGAGTGGAACGTGAATTGA 534 0.5581 MEGEGRRREGGERETATAAATRKVVEGADQRRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLIGEGAAALTGGCDMSAASIRKKASEVGARVDALQATLHHHHHHVVPPRQLLSASCGGGSGDFAVRVVDLNKMPEPESSDCEWNVN* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0461 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 14 171 - -
Gso11g0461 177 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
Gso11g0461 177 CDD AP2 32 91 IPR001471 GO:0003700|GO:0006355
Gso11g0461 177 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Gso11g0461 177 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Gso11g0461 177 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Gso11g0461 177 MobiDBLite consensus disorder prediction 1 16 - -
Gso11g0461 177 MobiDBLite consensus disorder prediction 1 23 - -
Gso11g0461 177 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Gso11g0461 177 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Gso11g0461 177 PRINTS Ethylene responsive element binding protein signature 71 91 IPR001471 GO:0003700|GO:0006355
Gso11g0461 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 14 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0461 Gso-Chr11 4064281 4065298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0461 9 174 AP2-EREBP Transcription Factor Family AT5G67190 54.787 1.65e-56 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso11g0461 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0461 K09286 - gmx:100783682 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1621 1 52890576 52891560 Gso11g0461 11 4064281 4065298 GST
Gso11g0461 11 4064281 4065298 Gso17g1434 17 15823152 15824010 PCT
Gso17g1434 17 15823152 15824010 Gso11g0461 11 4064281 4065298 PCT