Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0456 ATGGCCGTCGACCTCATGATGGGATATCGAAACCACAATTTCGCCCAAGAGAATGCCGTTCGTGAAGCTGCGTCGGGGCTAGAGAGCGTCGAGAAACTCATCAAGTTGCTGTCGCAGACCCAACAACAATTCCAGACAACATCTAATTCAACCTCAAACTCAAAGTCTTCCATGGCAAACATCGACACCGACTACAGAGCTGTCGCTGACGTGGCCGTCTCTAAGTTCAAGAAGGTCATTTCGCTTCTGGGCAGCAGCAGAACCGGTCACGCGCGTTTCAGAAGAGCCCCTGTTGCTCCCCCTCCTCCACCTGCGGAACCCAGAGTCTACCGTGCTACGCCGGTGCAGCAGATCCCGCCACCCACCCTTCACACTCACGCTGTTGTCACTGACCACTCCTTGGTCCCCAAAATTGAGAGAAAGGACTCTTCCAAGACCATTAATTTCTCCTATTCAAACTCGTTCGTCTCCTCCCTCACCGCCGGCGACACCGACACTAAACAACCGTGCTCGTCGTCGCCGTCCACGGCTTTTCAGATCACGAATCTCTCTCAGGTATCCTCCGGGGGAAAGCCTCCACTTTCGTCCTCTTCGTTGAAGAGGAAGTGTAGTTCTGAGAACTTGGGCTCTGCCAAGTGTGGCAGTTCCTCTAGCCGATGCCATTGTTCAAAGAAGAGCAGAAAAATGAGGCAGAAGAGGGTGGTGAGGGTACCAGCTATAAGCTTGAAGATGGCTGATATTCCACCCGATGATTACTCTTGGAGGAAATACGGACAGAAACCCATTAAAGGATCCCCTCATCCAAGAGGTTATTACAAGTGTAGCAGTGTTAGAGGGTGTCCAGCGCGCAAGCATGTAGAGAGGGCCCTTGATGATCCATCTATGTTGGTAGTTACCTATGAAGGAGAGCACAATCACACTCTCTCTGCGGCAGAAGCTACTAATCTCATCCTAGAATCCTCTTAA 966 0.5145 MAVDLMMGYRNHNFAQENAVREAASGLESVEKLIKLLSQTQQQFQTTSNSTSNSKSSMANIDTDYRAVADVAVSKFKKVISLLGSSRTGHARFRRAPVAPPPPPAEPRVYRATPVQQIPPPTLHTHAVVTDHSLVPKIERKDSSKTINFSYSNSFVSSLTAGDTDTKQPCSSSPSTAFQITNLSQVSSGGKPPLSSSSLKRKCSSENLGSAKCGSSSSRCHCSKKSRKMRQKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSAAEATNLILESS* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0456 321 Pfam WRKY DNA -binding domain 250 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g0456 321 ProSiteProfiles WRKY domain profile. 243 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g0456 321 SMART WRKY_cls 248 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g0456 321 MobiDBLite consensus disorder prediction 206 220 - -
Gso11g0456 321 MobiDBLite consensus disorder prediction 182 201 - -
Gso11g0456 321 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 13 321 - -
Gso11g0456 321 Pfam Plant zinc cluster domain 200 246 IPR018872 -
Gso11g0456 321 SUPERFAMILY WRKY DNA-binding domain 245 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso11g0456 321 MobiDBLite consensus disorder prediction 206 228 - -
Gso11g0456 321 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 13 321 IPR044810 GO:0003700
Gso11g0456 321 Gene3D WRKY domain 239 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0456 Gso-Chr11 4031654 4033329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0456 1 306 WRKY Transcription Factor Family AT2G24570 43.675 1.47e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso11g0456 WRKY 3.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0456 - - gmx:100127371 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1625 1 52933084 52935024 Gso11g0456 11 4031654 4033329 GST
Gso11g0456 11 4031654 4033329 Gso13g0738 13 21668752 21670390 PCT
Gso11g0456 11 4031654 4033329 Gso17g0479 17 4331943 4333609 PCT
Gso5g0840 5 27063748 27065918 Gso11g0456 11 4031654 4033329 PCT
Gso17g1426 17 15607512 15609619 Gso11g0456 11 4031654 4033329 PCT