Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0453 ATGGAACCAGCTTCAGCTGATTCTTCATCTCAACCTACTCCTCCAGCTTCTAATACTGAAGATCGGCACTCAACCAAAGCGTCTGGACAAACTGGCAATGCACATGATTCACAATTGTCATCACCCACTTCTGGCATATCATCCTGGGCAAGAAATCTGAAATTCCCACAGGCCCTTGGGCTTGGAGGAGCACAACAGAACTCCCAGGCCCAAAACGCTGGCATGTCAGCTTTTGCTCGCCTGACTGGTGGGCTTGGATTGCAAACGCTATCAAATGAAACTGCTCCAGTCAAGTCAGGAACCGAGCAATCTAACTTACTTGAATCCGTCACCAAAGGCTTGGTGGACTCTTCCAAGAGTGCAGTAAAGGCGGTGCAGGTCAAAGCTCGCCATATTGTCTCTCAAAATAAACGTAGATACCAGGAAGATGGATTTGATTTGGACATGACATACATCACTGAAAATATAATTGCTATGGGATTTCCGGGTGGTGATTTTAGCTCTGGAATTTTTGGATACATTGAGGGGTTCTATCGCAATCACATGGATGAAGTGATCAAGTTTTTTGAAACACATCATAAGGGAAAGTACAAAGTATACAATCTTTGTTCAGAAAGGTTATATGACGGATCATTATTCCAGGGGAAGGTTGCAACTTTCCCATTTAGTGATCATAATTGCCCTCCTATTCAACTTATAGCATCATTTTGTCAAAGTGCATATTCATGGTTGAAGGAGGATATTCAAAATGTGGTGGTTGTTCATTGTAAAGCTGGTATGGGGAGGACTGGACTGATGATATGTAGTCTTCTTTTATTTCTTAAGTTCTTCCCAACTGCAGAGGAAGCTATTGATTACTTTAACCATAAAAGATGTGTAGATGGAAAGGCTCTAATCCTCCCTAGTCAGATTAGATATGTAAAATACTTTGAACGGACTTTAACACACTTCAATGGAGAAGTCCAGCCAGGACGAAGGTGCATGCTAAGAGGGTTTCGGCTTCACGAATGCCCTTATTGGGTTAGACCATCTATTACAATTTCTGATCATAAGGGAATTCTTTTTACCACAAGAAAGCATCCCAAAACAAAGGATCTAATGCCAGAAGATTTCTGGATCAGTGCACCAAAGAAAGGAATTGTGGTTTTTGCCCTACCAGGAGAGCCTGGTCTAACAGAGTTGGTAGGAGACTTCAAAATTCAGTTTCAAGATCGACAGGGAGATTTCTACTGTTGGATGAATACAACATTGACAGAAAACCGAAAAATTTTGGATGGTTCAGATTTTGATGGTTTCGACAAGAGAAAGATCCCTGCTCCAGGATTCAAGGTGGAAATTGTGATGATAGGGTATAATGCCATCCTACCTGCAAATACAAAATCGAATCCTGCCAGCAAAGGATCTGATGGAAACACAAGCAATGCCCTACCTGGTCTAAAGCATACTACATCTAATTCAAGTGAGAGTGAAGTCCCTAGAAATGGAGATGATGATGTATTCTCAGACAGTGACGAAGAGGAGACCCGGGATACACAAAGCACGAAAGCTGCAACTGAGTACAAATTTATGGCACCTCATCAAGTATCTGAGACAACAACTGACCATGTAGGGATGTTGACACACAAAACGGATCAGTTGTCACTACAACAAGAGGAACGCAAGCAAAACGTTGCTTCTGAAGAATCAGATACAGATAAACTTCATAAAAATCATACAGGCAATAACAGTATAAACATGGGATCTGTAGGGGCAAGTGACATCAAGGCAATCGCGGCAGATGCTTCAGTTTTTTCCTTTGGAGATGAAGATTTTGAAAGTGACTGA 1824 0.4178 MEPASADSSSQPTPPASNTEDRHSTKASGQTGNAHDSQLSSPTSGISSWARNLKFPQALGLGGAQQNSQAQNAGMSAFARLTGGLGLQTLSNETAPVKSGTEQSNLLESVTKGLVDSSKSAVKAVQVKARHIVSQNKRRYQEDGFDLDMTYITENIIAMGFPGGDFSSGIFGYIEGFYRNHMDEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVATFPFSDHNCPPIQLIASFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMICSLLLFLKFFPTAEEAIDYFNHKRCVDGKALILPSQIRYVKYFERTLTHFNGEVQPGRRCMLRGFRLHECPYWVRPSITISDHKGILFTTRKHPKTKDLMPEDFWISAPKKGIVVFALPGEPGLTELVGDFKIQFQDRQGDFYCWMNTTLTENRKILDGSDFDGFDKRKIPAPGFKVEIVMIGYNAILPANTKSNPASKGSDGNTSNALPGLKHTTSNSSESEVPRNGDDDVFSDSDEEETRDTQSTKAATEYKFMAPHQVSETTTDHVGMLTHKTDQLSLQQEERKQNVASEESDTDKLHKNHTGNNSINMGSVGASDIKAIAADASVFSFGDEDFESD* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0453 607 MobiDBLite consensus disorder prediction 525 545 - -
Gso11g0453 607 Gene3D Protein tyrosine phosphatase superfamily 123 320 IPR029021 -
Gso11g0453 607 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 11 607 - -
Gso11g0453 607 MobiDBLite consensus disorder prediction 1 47 - -
Gso11g0453 607 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 252 291 IPR000387 GO:0016311|GO:0016791
Gso11g0453 607 MobiDBLite consensus disorder prediction 546 570 - -
Gso11g0453 607 CDD PTP_PTEN 148 312 IPR045101 GO:0016791
Gso11g0453 607 SMART PTEN_C2_2 322 450 IPR014020 -
Gso11g0453 607 ProSiteProfiles Phosphatase tensin-type domain profile. 138 317 IPR029023 -
Gso11g0453 607 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 11 607 - -
Gso11g0453 607 MobiDBLite consensus disorder prediction 461 490 - -
Gso11g0453 607 MobiDBLite consensus disorder prediction 461 581 - -
Gso11g0453 607 ProSitePatterns Tyrosine specific protein phosphatases active site. 254 264 IPR016130 GO:0016311|GO:0016791
Gso11g0453 607 ProSiteProfiles C2 tensin-type domain profile. 324 451 IPR014020 -
Gso11g0453 607 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 151 317 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0453 Gso-Chr11 4000692 4008568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0453 37 607 Protein tyrosine phosphatase (PTP) family AT3G19420 61.724 0.0 734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0453 K01110 - gmx:100807702 1202.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1629 1 52965600 52973292 Gso11g0453 11 4000692 4008568 GST
Gso11g0453 11 4000692 4008568 Gso20g1010 20 39869707 39875913 PCT
Gso11g0453 11 4000692 4008568 Gso10g2346 10 50395110 50403511 PCT