Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0446 ATGGACCGGATCAAAGGCCCATGGAGTCCGGAGGAGGACGAGGCTCTGCAGAAGCTGGTGGAGAAACACGGGCCCAGGAACTGGTCTCTGATCAGCAAGTCCATCCCGGGCCGGTCCGGCAAGTCCTGCAGGCTCCGGTGGTGCAACCAGCTGTCCCCCCAGGTGGAGCACCGGGCCTTCACGGCCGAAGAGGACGACACCATAATCCGGGCCCATGCCCGCTTCGGCAACAAGTGGGCCACCATAGCCCGCCTCCTCCACGGCAGAACCGACAACGCTATCAAAAACCACTGGAACTCCACCTTGAAGCGCAAGTGCTCTTCAACCATGATCGACGACAACACCCAACCGCTGAAAAGATCCGTGAGTGCCGGCGCGGCTATTCCAGTCTCTACTGGACTCTACATGAACCCGCCCACACCGGGTAGTCCCTCCGGATCCGATGTGAGCGAGTCCAGCTTACCGGTTGCATCCTCTTCGCACGTGTTCCGTCCCGTGCCTAGAACTGTCAAGGTTCTACCACCCGTAGAAACCACGTCGTCCTCCAATGACCCTCCAACTTCACTTTCTCTATCACTCCCCGGTGTTGGTGTTGTTGACTCATCCGAAGTCTCCAATCGGACAACTGAGCCGATTCATTTTACACCGCCAATGCCACATCGGTCGAATACTATGCCTTTGCTGCCAATGATGACGTCGGTTTCAGCGACGGTGATGGCGCCGTTTAATTTTAGCGCAGAGTTTCGGTCGGTGATGCAGGAAATGATAAGGAAGGAGGTGAGGAGTTATATAGAGTTGCACAATCAGAATGGGATGTGTTTTCAGGCTGCGGTGAATGATGGGTTTAGGAACGCTTCCGTCAAGCGTATTGGAATTAGCAGGGTTGATTCGTAA 894 0.5559 MDRIKGPWSPEEDEALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTAEEDDTIIRAHARFGNKWATIARLLHGRTDNAIKNHWNSTLKRKCSSTMIDDNTQPLKRSVSAGAAIPVSTGLYMNPPTPGSPSGSDVSESSLPVASSSHVFRPVPRTVKVLPPVETTSSSNDPPTSLSLSLPGVGVVDSSEVSNRTTEPIHFTPPMPHRSNTMPLLPMMTSVSATVMAPFNFSAEFRSVMQEMIRKEVRSYIELHNQNGMCFQAAVNDGFRNASVKRIGISRVDS* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0446 297 MobiDBLite consensus disorder prediction 132 160 - -
Gso11g0446 297 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 2 240 - -
Gso11g0446 297 CDD SANT 7 49 IPR001005 -
Gso11g0446 297 PANTHER MYB PROTEIN-RELATED 2 240 - -
Gso11g0446 297 SMART sant 56 104 IPR001005 -
Gso11g0446 297 SMART sant 4 53 IPR001005 -
Gso11g0446 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Gso11g0446 297 CDD SANT 59 102 IPR001005 -
Gso11g0446 297 Gene3D - 58 123 - -
Gso11g0446 297 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Gso11g0446 297 Pfam Myb-like DNA-binding domain 59 101 IPR001005 -
Gso11g0446 297 Pfam Myb-like DNA-binding domain 5 51 IPR001005 -
Gso11g0446 297 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Gso11g0446 297 Gene3D - 4 56 - -
Gso11g0446 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Gso11g0446 297 MobiDBLite consensus disorder prediction 136 159 - -
Gso11g0446 297 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0446 Gso-Chr11 3939375 3940940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0446 1 296 MYB Transcription Factor Family AT4G37260 53.172 8.60e-102 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso11g0446 Myb_DNA-binding 9.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0446 K09422 - gmx:778197 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1635 1 53013496 53014888 Gso11g0446 11 3939375 3940940 GST
Gso5g0856 5 27987746 27989421 Gso11g0446 11 3939375 3940940 PCT
Gso17g1417 17 15289172 15290720 Gso11g0446 11 3939375 3940940 PCT