Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0423 ATGAGTTGCAACGGGTGCCGCGTCCTTCGAAAGGGTTGCAGCGAGTCTTGTATTCTGCGGCCGTGTCTACAGTGGATCGATACGCCCGAAGCACAAGGCCATGCCACTGTCTTCGTTGCCAAATTCTTCGGTCGTGCCGACCTCATGTCCTTCATTTCTAACGTCCCCGAACCCCAAAGGCCCGCTCTGTTTCAATCTCTGTTGTTCGAAGCGTGTGGAAGAACAGTGAACCCTGTCAACGGTGCTGTGGGACTTTTGTGGACCGGAAACTGGCACGTGTGCCAGGCGGCGGTTGAGACGGTGCTCCGTGGCGGCACCGTCAGGCCCATGCCGGAGCTTCTCGGCCTAGACGCTCCCACTCCCACCACCGATGACGCCTCCGAAGGAGAAGTTACCTGTACCGACAAGTGGAGAGTCCGAGATCCGAACCCGAATTTCCGGTTCCCGGGTTCGAGGTCCGATAAGGGTAGTTCCGGCGGTAAACGCAAGCGATTTGAAGAGCTCGCCAAGCTTCAGACGGCGACGACGGATCTCAATCTCCGGCTGACGCCGAGTTTTCTGCAGAACGCGGCGAACTTCGGCTGCCGGCAGGAAATTCGCTGGCCGGGATCTCCGTCGATGAACTCCGAGGAGTCCGGGACGACGACAGCGTGTTTGGAGAGCGGGATCGGAGATCACTACGCTCCCGACGGAGACCGGAAAGTGCTGAACCTTTTCATTTGA 723 0.5851 MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTVRPMPELLGLDAPTPTTDDASEGEVTCTDKWRVRDPNPNFRFPGSRSDKGSSGGKRKRFEELAKLQTATTDLNLRLTPSFLQNAANFGCRQEIRWPGSPSMNSEESGTTTACLESGIGDHYAPDGDRKVLNLFI* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0423 240 MobiDBLite consensus disorder prediction 142 162 - -
Gso11g0423 240 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Gso11g0423 240 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Gso11g0423 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 240 - -
Gso11g0423 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0423 Gso-Chr11 3735530 3736814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0423 1 239 AS2 family AT3G49940 55.212 3.44e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso11g0423 LOB 6.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0423 - - gmx:100802764 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1657 1 53209443 53210815 Gso11g0423 11 3735530 3736814 GST
Gso11g0423 11 3735530 3736814 Gso20g1059 20 40314817 40316626 PCT
Gso11g0423 11 3735530 3736814 Gso10g2296 10 50026418 50027943 PCT
Gso17g1367 17 14148522 14149962 Gso11g0423 11 3735530 3736814 PCT