Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0419 ATGAAAGCTCGTCACTTGAGCTTCTTCTACCTCCACATCATCGTCTTCACACTCTCCCTATCCCTACCCATACAAGTCAACACTGCAAAAGGGATCAACAACACCATCACGAATGAATCTGGCAATAATAGAAGAATCCTGCACCAGCCATTGTTCCCGGCGAGTTCCGCTCCCCCGCCAGCAGGCACGGCGTCTCCACCACCGTCTACACCGGTGGTGGAAACTCCTCCCTCTCCGGACGGCGGCAACAACATCCCCTTCTTCCACGAGTACCCGGCGGGCCCCCCGGCGGATCAGAACCAACACGCAGCACCGTCGTCCACGGTGAACTCCACAATCGCAAACCCAACGGCAACACAGCCGACAAAGGGAACAAAAAAAGTAGCAATCGCGATCTCAGTGGGAATTGTGACGCTTGGGATGCTCTCGGCACTCGCTTTCTTTTTATACAAACACAGAGCAAAACACCCCGTGGAGACTCAAAAACTCGTGGCTGCTGGAAGTGGGAACAACAATAACTCAAACAGGAACAGCAACGAGGTTGCAAACACAACCTCGGCACCGTCGAGTTTCCTCTACATTGGGACCGTGGAGCCCACGGACTCACGAGATAATAGAAATGCTATTAAGCCCAACAGATCGCCGTATCACAAACTCAAGCGATCCGATCGCTACCGGCCGAGTCCCGAATTACAGCCAATGCCGCCGCTCACTAAGCCTCCCGACGGGAATTACCCGCCGGCGGTGTCTTCCTCGTCGGACTCCGACGAGGAGAGCCGCGATACGGCGTTTCATTCGCCGCAGAACTCGTCCGTCGATGGATATTACACGCCGGCTTCACGGCATAGCTCTCTGGTTAATGGTAGTCCTGCGAAGAAAGAAACGAATTCCACTCCCACACCCGTTGCTGTTCCGTTCTCCAAGAGAACTTCGCCCAAGTCACGCGTTTCGGCACCCTCGCCGGAGATTAGACACGTCATCATACCTTCCATAAAGCAGCCTCCACCACAGTCGCCGCCGCCACCTAAGCATTCGAGAAAGCCGAAATTCTCGGCGCCTCCCCCACCTCCGAATTTGAAGCGTCTTCAGTCAACAAAAACAACCGACACTGCTTTGCACGTGTCAAGGACTTCACTTAATCCTCCTCCTCCACCACCTCCTCCTCCGCCACCACCTCCACCGCTGCAGCGAAAATCAGTGTCTCCGGCGGTTAGTGCTTCCTCTACTACTTGTGCATCTGTAAAGCGACAATCTTGGTCACCAATTCAATGTAGTGTGACGAATGTTTCTGAGGAGGTGGAGCAAAGTCAAAGTGTGAGCTCTTCCGAGAGGCATGAAGCCAATGACACGGATGGAGCCAAACCAAAACTGAAAGCTCTGCATTGGGATAAAGTGCGTGCGACCTCAGACCGTGCTACTGTGTGGGACCAGATCAAATCAAGCTCCTTTCAGTTAAATGAAGACATGATGGAATCGTTGTTTGGATGCAAAGCCACAAATTCTGCACCGAAAGAACCTCCAAGAAAAAAATCAGTTCTTCCTTTCGTTGATCAGGAGAACAGGGTGTTAGACCCGAAGAAGTCACAGAACATAGCTATTCTTCTCAGGGCTTTGAATGTGACAAAAGATGAGGTGTCTGAAGCTCTTTTAGATGGGAATCCTGAAGGCTTGGGCACTGAGCTGTTGGAAACCCTAGTAAAGATGGCTCCTACTAAAGAGGAAGAGATAAAACTCAAAAACTATGATGGTGATCTCTCAAAACTTGGATCTGCAGAAAGATTTCTTAAAGCAGTGCTTGATATCCCTTTCGCCTTTAAACGAGTTGAAGCTATGCTATATAGAGCCAACTTTGATGCAGAAGTTAACTACCTTAGAAAGTCTTTTCAAACCATGGAGGCTGCAAGTGAGGAATTAAAGAACAGCCGGTTATTCCTCAAACTCCTTGAAGCTGTTCTAAGGACAGGAAACAGAATGAATGTTGGAACTAACCGAGGGGATGCTAAAGCTTTCAAATTGGACACACTTCTAAAACTTGTAGATATAAAGGGAACAGATGGAAAGACCACATTGCTCCACTTTGTGGTCCAAGAAATCATTAGATCTGAAGGTGCTGGAGCTGAATCTGCAAATGATAATGTGAAGATGGATTCCAAATTTAATGAAGATGAGTTTAAGAAGCAAGGCTTGCAGGTTGTGGCAGGGCTCAGTAGAGATCTTAGTGATGTAAAAAAAGCAGCCGGAATGGATTCAGATGTCTTGAGCAGCTATCTTTCAAAGCTTGAAACAGGGCTTGATAAAGTGCGATTGGTTTTCCAATATGAAAAGCCAGATATGCAAGGCAATTTCTTTAACTCCACAAAGCTATTTCTGAAATATGCTGAAGATGAAATTGTACGGATTAAAGCAGATGAGAGAAAAGCCTTGTACCTTGTAAAAGAAGTTACTGAATACTTTCATGGGAATGCAACAAAGGAAGAAGCCCACCCTCTCAGAATTTTCATGATTGTAAGAGACTTTCTGAATATCTTGGATCTAGTGTGCAAAGAAGTGGAAAAGATGCATGATAGAATTGTTGGTGGTTCTGGCAGATCTTTCCGAATACCTCCAAATGCATCATTACCTGTTGTCAACAGGTACAATCATCGAAAGCAAGATAGAAGCTCAGATGAGGAAAGCTCATCTCCCTAG 2688 0.4747 MKARHLSFFYLHIIVFTLSLSLPIQVNTAKGINNTITNESGNNRRILHQPLFPASSAPPPAGTASPPPSTPVVETPPSPDGGNNIPFFHEYPAGPPADQNQHAAPSSTVNSTIANPTATQPTKGTKKVAIAISVGIVTLGMLSALAFFLYKHRAKHPVETQKLVAAGSGNNNNSNRNSNEVANTTSAPSSFLYIGTVEPTDSRDNRNAIKPNRSPYHKLKRSDRYRPSPELQPMPPLTKPPDGNYPPAVSSSSDSDEESRDTAFHSPQNSSVDGYYTPASRHSSLVNGSPAKKETNSTPTPVAVPFSKRTSPKSRVSAPSPEIRHVIIPSIKQPPPQSPPPPKHSRKPKFSAPPPPPNLKRLQSTKTTDTALHVSRTSLNPPPPPPPPPPPPPPLQRKSVSPAVSASSTTCASVKRQSWSPIQCSVTNVSEEVEQSQSVSSSERHEANDTDGAKPKLKALHWDKVRATSDRATVWDQIKSSSFQLNEDMMESLFGCKATNSAPKEPPRKKSVLPFVDQENRVLDPKKSQNIAILLRALNVTKDEVSEALLDGNPEGLGTELLETLVKMAPTKEEEIKLKNYDGDLSKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVNYLRKSFQTMEAASEELKNSRLFLKLLEAVLRTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEGAGAESANDNVKMDSKFNEDEFKKQGLQVVAGLSRDLSDVKKAAGMDSDVLSSYLSKLETGLDKVRLVFQYEKPDMQGNFFNSTKLFLKYAEDEIVRIKADERKALYLVKEVTEYFHGNATKEEAHPLRIFMIVRDFLNILDLVCKEVEKMHDRIVGGSGRSFRIPPNASLPVVNRYNHRKQDRSSDEESSSP* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0419 895 PRINTS Proline rich extensin signature 221 233 - -
Gso11g0419 895 PRINTS Proline rich extensin signature 235 251 - -
Gso11g0419 895 PRINTS Proline rich extensin signature 301 322 - -
Gso11g0419 895 PRINTS Proline rich extensin signature 338 355 - -
Gso11g0419 895 PRINTS Proline rich extensin signature 381 406 - -
Gso11g0419 895 MobiDBLite consensus disorder prediction 361 377 - -
Gso11g0419 895 PANTHER FORMIN-RELATED 2 895 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Gso11g0419 895 MobiDBLite consensus disorder prediction 203 227 - -
Gso11g0419 895 MobiDBLite consensus disorder prediction 165 202 - -
Gso11g0419 895 MobiDBLite consensus disorder prediction 400 420 - -
Gso11g0419 895 MobiDBLite consensus disorder prediction 53 75 - -
Gso11g0419 895 ProSiteProfiles Formin homology-2 (FH2) domain profile. 447 869 IPR015425 -
Gso11g0419 895 SMART it6_source 447 858 IPR015425 -
Gso11g0419 895 PANTHER FORMIN-LIKE PROTEIN 2 895 - -
Gso11g0419 895 MobiDBLite consensus disorder prediction 50 125 - -
Gso11g0419 895 Pfam Formin Homology 2 Domain 450 843 IPR015425 -
Gso11g0419 895 MobiDBLite consensus disorder prediction 264 317 - -
Gso11g0419 895 MobiDBLite consensus disorder prediction 432 456 - -
Gso11g0419 895 MobiDBLite consensus disorder prediction 332 360 - -
Gso11g0419 895 SUPERFAMILY Formin homology 2 domain (FH2 domain) 383 854 - -
Gso11g0419 895 MobiDBLite consensus disorder prediction 100 125 - -
Gso11g0419 895 MobiDBLite consensus disorder prediction 165 420 - -
Gso11g0419 895 MobiDBLite consensus disorder prediction 229 243 - -
Gso11g0419 895 MobiDBLite consensus disorder prediction 378 398 - -
Gso11g0419 895 Gene3D Formin, FH2 domain 443 855 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0419 Gso-Chr11 3665725 3671008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0419 35 885 FH2 protein (formin) Gene Family AT5G67470 56.969 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0419 - - gmx:100798670 1595.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1661 1 53284321 53289723 Gso11g0419 11 3665725 3671008 GST
Gso11g0419 11 3665725 3671008 Gso5g0909 5 29774563 29779871 PCT
Gso11g0419 11 3665725 3671008 Gso17g1361 17 13997187 14002210 PCT
Gso5g0909 5 29774563 29779871 Gso11g0419 11 3665725 3671008 PCT
Gso17g1361 17 13997187 14002210 Gso11g0419 11 3665725 3671008 PCT