Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0417 ATGATGGAGAGTTATTTAAATGAGAATTTTGAAGTGAAGTCCAAAAATTCATCTGAAGAGGCTCTTCAACGATGGAGGAGACTATGCAGGGTCGTGAAGAACCCCAAAAGACGCTTTCGTTTCACTGCAAATCTCTCCAAGAGGGGCGAAGCTGCTGCTATGCGTCGTACCAATCAGGAGAAGATCAGGGTTGCAGTTTTGGTTTCCAAAGCAGCACTTCAATTTATCCTAGGTGTGCAACTAAGCGATTACAAAGTGCCAGAGGAAGTTGAAGATGCAGGTTTTGAAATCTGCGGCGATGAATTGGGGTCTATTGTTGAAGGCCATGATGTAAAGAAGTTCAGACATCATGGTGGGGTTAATGGCATTGCTGAGAAGCTTTCTACATCAACCACTGAGGGGCTTAACAATGATACCGAGTTACTGAATAGGAGACAGCAGATATATGGAATCAACAAATTCACTGAAAGTGCAGCTACAAGTTTCTGGGTTTTTGTTTGGGAAGCCTTTCAAGACATGACTCTGATGATACTTGGAGTGTGTGCTATTGTGTCACTGCTAGTTGGCATTGCAACTGAAGGATGGCCAAAGGGGGCTCACGATGGTCTTGGAATTGTTGCAAGTATATTGCTTGTTGTCTTTGTGACAGCAACGAGCGATTATCGCCAATCGTTACAGTTCAGGGATTTAGACAAGGAGAAGAAGAAAATTTCCATTCAGGTCACAAGAAATGGATACAGACAGAAAATGTCAATATATGAATTACTTCCTGGTGACATTGTGCACCTTGCCATTGGTGATCAAGTCCCTGCTGATGGACTATTTGTCTCAGGATTTTCCGTATTGATTGATGAGTCAAGCTTAACAGGAGAGAGTGAGCCAGTGATGGTGAGTTCAGAAAATCCATTTCTTCTTTCTGGAACAAAGGTCCAAGATGGATCATGCAAGATGCTGGTCACCAGTGTTGGCATGAGGACTCAATGGGGTAAGTTGATGGCTACTCTCAGTGAAGGTGGAGATGATGAAACCCCACTACAGGTGAAGTTGAATGGTGTTGCAACAATTATTGGCAAGATAGGCCTATTCTTTGCAGTGGTTACTTTTGCAGTTCTGGTGCAAGGACTTGTAAGCCAAAAACTCCAACAAGGAAGCTTACGGAGCTGGACCGGTGACGATGCGTTGGAACTGTTGGAGTTCTTTGCAGTTGCAGTTACCATAGTCGTTGTTGCTGTTCCGGAGGGGCTGCCACTAGCTGTGACACTGAGCCTTGCATTTGCAATGAAGAAAATGATGAATGACAAAGCCCTTGTGAGACATTTGGCAGCATGTGAGACCATGGGATCAGCCACAACTATATGTAGTGACAAGACTGGGACACTAACAACCAACCACATGACTGTTGTCAAAACATGCTTTTGCTTGAACAGCAAGGAAGTGAGCAGCAATAAGGATTCTTCTAGTTTGTGCTCTGAACTCCCAGAACCTGCTGTGAAACTTCTACAACAGTCAATATTCAACAATACAGGAGGAGAGGTTGTGATTAACCAAAATGGCAAACGTGAGATTCTAGGAACTCCAACCGAGGCTGCAATATTGGAGTTTGGTTTGTCATTAGGTGGAGATTTTCAAGGAGAGAGACAAGCATGTAAACTTGTTAAAGTTGAGCCATTCAATTCCACCAAAAAGAAAATGAGTGTGGTGGTTGAGCTCCCTGGTGGAGGCTTAAGAGCCCACTGCAAAGGTGCTTCTGAAATAATTCTGGCTGCTTGTGACAAAGTTCTCAACTCAAACGGTGAGGTTGTACCCCTTGATGAAGAATCAACTAACCATCTTAAGGATACAATAAACCAGTTTGCAAGTGAGGCCCTTAGAACTCTATGCCTTGCCTATGTGGAATTGGAAAACGGGTTCTCTACTGAAGACCCTATTCCTGTTTCTGGATATACATGCATAGGAGTTGTTGGTATAAAAGATCCTGTTCGTCCCGGTGTTAAGGAATCTGTGGCAATGTGTCGTTCAGCTGGAATAACAGTTAGAATGGTTACTGGTGACAACATTAACACTGCAAAGGCTATAGCCAGGGAGTGTGGGATTTTAACTGATGATGGCATAGCTATTGAAGGTCCAGAGTTTAGAGAGAAGAGTCAGAAAGAGTTGCTTGAACTGATTCCCAAAATTCAGGTTATGGCTCGATCCTCACCTTTAGACAAACACACATTGGTGAAACACTTGCGTACTACTTTTGGGGAAGTGGTAGCTGTAACAGGTGATGGAACTAATGATGCCCCAGCCCTTCATGAAGCTGACATTGGACTTGCAATGGGAATTGCTGGAACTGAGGTTGCAAAAGAAAGTGCAGATGTCATAATTCTGGATGATAACTTCTCCACGATAGTAACAGTGGCCAAATGGGGACGTTCGGTTTACATAAATATTCAGAAATTCGTACAGTTTCAGTTAACCGTTAATGTGGTTGCATTAATAGTGAATTTCACATCAGCCTGCTTAACAGGAACTGCACCCCTCACAGCTGTTCAACTCTTGTGGGTGAACATGATAATGGACACACTGGGAGCACTTGCTCTTGCTACTGAACCTCCAAATGATGATTTAATGAAACGTTCACCTGTTGGAAGGAAGGGAAATTTCATCAGCAATGTCATGTGGAGGAACATCTTAGGTCAATCCTTGTATCAGTTTATGGTGATATGGTTTCTTCAGTCAAGAGGAAAATCAATCTTTTTACTTGAGGGCCCCAATTCAGATCTAGTCTTAAACACGCTTATTTTTAACACGTTTGTCTTCTGCCAGGTTTTCAATGAGATAAATTCACGTGAAATGGAGAAAATAAACGTTTTTAAAGGCATATTGGATAACTATGTTTTCGTGGGTGTCATCAGTGCTACTGTTTTCTTCCAAATCATAATAGTTGAGTACTTGGGAACCTTTGCAAACACAACACCTCTCACCCTGGCACAGTGGTTCTTTTGCTTGTTGGTTGGATTTTTGGGCATGCCAATTGCTGCTCGCTTAAAGAAGATCCCTGTTTGA 3051 0.4281 MMESYLNENFEVKSKNSSEEALQRWRRLCRVVKNPKRRFRFTANLSKRGEAAAMRRTNQEKIRVAVLVSKAALQFILGVQLSDYKVPEEVEDAGFEICGDELGSIVEGHDVKKFRHHGGVNGIAEKLSTSTTEGLNNDTELLNRRQQIYGINKFTESAATSFWVFVWEAFQDMTLMILGVCAIVSLLVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFRDLDKEKKKISIQVTRNGYRQKMSIYELLPGDIVHLAIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVSSENPFLLSGTKVQDGSCKMLVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGLVSQKLQQGSLRSWTGDDALELLEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKTCFCLNSKEVSSNKDSSSLCSELPEPAVKLLQQSIFNNTGGEVVINQNGKREILGTPTEAAILEFGLSLGGDFQGERQACKLVKVEPFNSTKKKMSVVVELPGGGLRAHCKGASEIILAACDKVLNSNGEVVPLDEESTNHLKDTINQFASEALRTLCLAYVELENGFSTEDPIPVSGYTCIGVVGIKDPVRPGVKESVAMCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPEFREKSQKELLELIPKIQVMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALIVNFTSACLTGTAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRSPVGRKGNFISNVMWRNILGQSLYQFMVIWFLQSRGKSIFLLEGPNSDLVLNTLIFNTFVFCQVFNEINSREMEKINVFKGILDNYVFVGVISATVFFQIIIVEYLGTFANTTPLTLAQWFFCLLVGFLGMPIAARLKKIPV* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0417 1016 PANTHER CALCIUM-TRANSPORTING ATPASE 1 5 1015 - -
Gso11g0417 1016 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 49 IPR024750 GO:0005516
Gso11g0417 1016 Pfam E1-E2 ATPase 237 431 - -
Gso11g0417 1016 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 1015 IPR023298 -
Gso11g0417 1016 Gene3D - 17 77 - -
Gso11g0417 1016 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 110 1016 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gso11g0417 1016 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 726 841 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso11g0417 1016 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 395 489 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso11g0417 1016 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 547 700 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso11g0417 1016 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Gso11g0417 1016 PRINTS H+-transporting ATPase (proton pump) signature 611 629 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso11g0417 1016 PRINTS H+-transporting ATPase (proton pump) signature 755 771 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso11g0417 1016 PRINTS H+-transporting ATPase (proton pump) signature 787 812 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso11g0417 1016 CDD P-type_ATPase_Ca_PMCA-like 142 888 - -
Gso11g0417 1016 SFLD Haloacid Dehalogenase 435 807 - -
Gso11g0417 1016 Gene3D - 140 336 - -
Gso11g0417 1016 PANTHER CATION TRANSPORTING ATPASE 5 1015 - -
Gso11g0417 1016 Gene3D - 463 659 IPR023299 GO:0000166
Gso11g0417 1016 SFLD p-type atpase 435 807 IPR044492 -
Gso11g0417 1016 Pfam Cation transporting ATPase, C-terminus 840 1013 IPR006068 -
Gso11g0417 1016 Pfam Cation transporter/ATPase, N-terminus 116 185 IPR004014 -
Gso11g0417 1016 SUPERFAMILY HAD-like 451 860 IPR036412 -
Gso11g0417 1016 Gene3D - 450 800 IPR023214 -
Gso11g0417 1016 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Gso11g0417 1016 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Gso11g0417 1016 PRINTS P-type cation-transporting ATPase superfamily signature 652 663 - -
Gso11g0417 1016 PRINTS P-type cation-transporting ATPase superfamily signature 674 684 - -
Gso11g0417 1016 PRINTS P-type cation-transporting ATPase superfamily signature 755 774 - -
Gso11g0417 1016 PRINTS P-type cation-transporting ATPase superfamily signature 779 791 - -
Gso11g0417 1016 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Gso11g0417 1016 SMART Cation_ATPase_N_a_2 114 190 IPR004014 -
Gso11g0417 1016 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 664 IPR023299 GO:0000166
Gso11g0417 1016 Gene3D - 168 1004 - -
Gso11g0417 1016 Pfam Cation transport ATPase (P-type) 515 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0417 Gso-Chr11 3633112 3638810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0417 2 1016 Primary Pumps ATPases AT4G37640 81.594 0.0 1710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0417 K01537 - gmx:100792691 1965.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1665 1 53321809 53327616 Gso11g0417 11 3633112 3638810 GST
Gso11g0417 11 3633112 3638810 Gso17g1360 17 13990488 13995762 PCT
Gso17g1360 17 13990488 13995762 Gso11g0417 11 3633112 3638810 PCT