Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0411 ATGGATACCACGTTGTTTAGAGTAGTGAGTAGTTTCCAACATCACCAAGCTGATCAAGATCATCAATCCCTCAACAACTCCACCACAAGCAGCAGCTCTCGATCCTCCAGACAAGAGCAAAACTATCCCTACCCACAAGAACACGACGAAGAATGCTTCAACTTTTTCATGGATGATGAAGACTTATCCTCGTCTTCTTCCAAGCACTACTATCCCTATCAACCCCACCCTCCCTCCACTACCGACCATTCCTTCTCCCCCACTCCCGGCGTCGACGTTGTCTTCCCCTTCGAGTTCTCCTCCGGAAAGTGGGCCCAGGACATCCTCCTCGAAACCGCACGTGCCGTTGCCGACAAGAACACCACCCGCCTTCAACAACTCATGTGGATGCTAAACGAGCTCAGCTCCCCCTACGGCGACACCGACCAGAAACTAGCCTCGTACTTCCTCCAAGCCTTCTTCAGCCGCATCACCCAAGCCGGGGACCGAACCTACAAAACCTTAGCTTCAGCTTCCGAGAAAACATGCTCCTTCGAATCAACCCGCAAGACGGTGCTGAAGTTCCAAGAGTTGAGTCCCTGGACAACCTTCGGCCACGTGGCATCCAATGGCGCCATCTTAGAAGCCTTGGAAGGAGAGCCCAAACTACACATAGTTGACATCAGCAACACCTATTGCACCCAATGGCCAACCCTCTTCGAAGCCTTGGCAACTCGAAACGATGACACTCCGCATCTCCGTTTAACCTCCGTCGTCACCGCCGGCGCCACCGCGCAGAAGGTCATGAAGGAAATCGGAGCCAGAATGGAGAAATTCGCCAGACTCATGGGCGTGCCCTTTAAATTCAACGTCGTTCATCATGTAGGTCAACTCTCTGACCTCGATTTCAGTGTGCTAGATATTAAAGAAGACGAGGCGTTGGCGATTAACTGTGTTAACACCTTGCATTCGATCGCCGCCGTGGGGAACCACCGTGACGCGGTTATATCTTCGTTGAGGAGGTTGAAACCGAGGATCGTGACGGTGGTGGAGGAGGAGGCTGATTTGGACATTGGATTGGAAGGGTTTGAGTTCGTGAAAGGGTTTGAAGAGTGTTTGAGGTGGTTTAGGGTTTACTTTGAGGCCTTGGACGAGAGTTTTCCGCGGACGAGCAACGAGCGTTTGATGCTTGAGAGGGCGGCGGGGAGGGCGGTGGTGGACCTGGTGGCGTGTTCTCCGGCGGATTCCGTAGAGAGGCGGGAGAAGGCGGCGCGGTGGGCGAGGAGGATGCATGGAGGTGGGGGGTTCAATACGGTGGCGTTTAGCGAAGAGGTATGCGATGATGTGAGGGCGTTGTTGAGGAGGTATAGGGAAGGGTGGGCAATGACACAGTGCTCCGACGCCGGAATATTCCTGACGTGGAAGGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGGGCCTTGACGTAG 1449 0.5431 MDTTLFRVVSSFQHHQADQDHQSLNNSTTSSSSRSSRQEQNYPYPQEHDEECFNFFMDDEDLSSSSSKHYYPYQPHPPSTTDHSFSPTPGVDVVFPFEFSSGKWAQDILLETARAVADKNTTRLQQLMWMLNELSSPYGDTDQKLASYFLQAFFSRITQAGDRTYKTLASASEKTCSFESTRKTVLKFQELSPWTTFGHVASNGAILEALEGEPKLHIVDISNTYCTQWPTLFEALATRNDDTPHLRLTSVVTAGATAQKVMKEIGARMEKFARLMGVPFKFNVVHHVGQLSDLDFSVLDIKEDEALAINCVNTLHSIAAVGNHRDAVISSLRRLKPRIVTVVEEEADLDIGLEGFEFVKGFEECLRWFRVYFEALDESFPRTSNERLMLERAAGRAVVDLVACSPADSVERREKAARWARRMHGGGGFNTVAFSEEVCDDVRALLRRYREGWAMTQCSDAGIFLTWKEQPVVWASAWRALT* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0411 482 PANTHER PROTEIN SHORT-ROOT 1 479 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Gso11g0411 482 MobiDBLite consensus disorder prediction 14 42 - -
Gso11g0411 482 ProSiteProfiles GRAS family profile. 96 479 IPR005202 -
Gso11g0411 482 MobiDBLite consensus disorder prediction 14 44 - -
Gso11g0411 482 Pfam GRAS domain family 107 479 IPR005202 -
Gso11g0411 482 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 479 IPR005202 -
Gso11g0411 482 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0411 Gso-Chr11 3594334 3596435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0411 4 479 GRAS Transcription Factor Family AT4G37650 60.566 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso11g0411 GRAS 8.3e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0411 - - gmx:100797072 955.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1670 1 53360702 53363012 Gso11g0411 11 3594334 3596435 GST
Gso11g0411 11 3594334 3596435 Gso5g0914 5 29886947 29888963 PCT
Gso11g0411 11 3594334 3596435 Gso17g1355 17 13951192 13953114 PCT
Gso5g0914 5 29886947 29888963 Gso11g0411 11 3594334 3596435 PCT
Gso17g1355 17 13951192 13953114 Gso11g0411 11 3594334 3596435 PCT