Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0401 ATGCTCATTATTATTTCTTTTTTACCACAAATAAAGCAAATTTCCACAGTAAACCCCTCTCTTTTCCCTTCAATACTCACTTCTTCTCTTTCTCGTTGCACTGATCTTAGAGGGGTTTGTGTTCTTGGTTTCCTCCCCTTTCTCTCTCTCTCTGCCTTGCATTTTTGTGTGTTTTTCTCAATAGGGGTTTCGAAAATGCCGATGTTTCAGCCTTGTCGGAAGGACTTGGTTGCCGGGTACGAGGGTGGTGGCGACGGCCAGATTCTAGATCTGGACACCGCCGTGAAAGACGGCGTTTTGGGCGGCGTGGAGGGCGGCGTCCTGGGAGGTGGGGTTGGTGAGAAGGTGGATCTGGGGAAGATGATTGAGGAGCTTGAGTTATGTGAAGTGCCGAGTGTGTTCATTTGCCCAATCTCATTGGAACCAATGCAAGACCCTGTTACCCTCTGCACAGGCCAAACCTACGAGAGGTCCAACATTCTTAAATGGTTCAACTTGGGACACTTCACCTGCCCCACCACGATGCAGGAGCTCTGGGATGATTCCGTCACTCCAAACACCACCCTTTACAGGCTCATACACATGTGGTTCTCGCAGAAGTACTTGCTCATGAAGAAGAGGTCAGAGGATGTTCAAGGAAGGGCTTCTGAACTTCTTGAGACACTGAAGAAGGTGAAGAGTCAGGCTCGGGTTCAGGCCCTCAAGGAGCTTCACCAATTAGTGGCTTCCCATGCCACTGCACGCAAGACTGTCATTGATGAAGGTGGAGTTTCTGTTGTATCTTCTTTGCTTGGTCCTTTTACTTCCCATGCTGTTGGCTCTGAGGTTATTGGTATTCTTGTGACTTTGACACTTGATTCGGAATCTAGGAAGAATCTCTTGCAGCCTGCCAAGGTTTCCTTAATGGTGGACATCTTGAATGAGGGTTCCATTGAGACGAAGATCAATTGCACGCGGTTGATTGAATCGTTGATTGAGGAGAAGGATTTTCGATCCGAGGTTATCTTGAGCCATAGCCTCTTGGTTGGGTTGATGAGGCTTGTTAAGGATAAGAGGCACAACAATGGAGTGTGTCCTGGGCTGAGTCTCCTCAGAACAATTTGTTTGCATAAGGAAGTTAGGAATTTGCTTGTGAGCATTGGGGCTGTTTCTCAGTTGGTTGAATTGTTGTCTGGCATGGAGCCTGATTGTTTGGAATTGGCCCTTTGTGTTTTGGATGCGTTGGCTTCGGTCCCTGAAGGTAGAGTGGCTTTGAAGGATTGCTCTAACACCATACCCATCATGGTGAAACTGTTGATGAGGATCTCAGAAAACTGCACTCAGTATGCTTTGTCAATTCTATGGTCTGTGTGTAAGCTTTCACCTGAAGAGTGCTCGTCGATTGCGGTTGATGCAGGGCTTGCTGCGAAACTCCTACTCGTGATTCAGAGTGGTTGCAATCCTATATTGAAACAGCAGTCTGCTGAGCTTTTGAAGCTGTGTAGTTTAAATTATTCAGATACTATCTTTCTTTCCAAGTGCAAGCTTACCAGAACCATCCAATGA 1545 0.4686 MLIIISFLPQIKQISTVNPSLFPSILTSSLSRCTDLRGVCVLGFLPFLSLSALHFCVFFSIGVSKMPMFQPCRKDLVAGYEGGGDGQILDLDTAVKDGVLGGVEGGVLGGGVGEKVDLGKMIEELELCEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHFTCPTTMQELWDDSVTPNTTLYRLIHMWFSQKYLLMKKRSEDVQGRASELLETLKKVKSQARVQALKELHQLVASHATARKTVIDEGGVSVVSSLLGPFTSHAVGSEVIGILVTLTLDSESRKNLLQPAKVSLMVDILNEGSIETKINCTRLIESLIEEKDFRSEVILSHSLLVGLMRLVKDKRHNNGVCPGLSLLRTICLHKEVRNLLVSIGAVSQLVELLSGMEPDCLELALCVLDALASVPEGRVALKDCSNTIPIMVKLLMRISENCTQYALSILWSVCKLSPEECSSIAVDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFLSKCKLTRTIQ* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0401 514 Gene3D - 203 509 IPR011989 -
Gso11g0401 514 PANTHER WDSAM1 PROTEIN 102 513 IPR045185 GO:0061630
Gso11g0401 514 CDD RING-Ubox_PUB 134 176 IPR045210 -
Gso11g0401 514 Pfam U-box domain 130 200 IPR003613 GO:0004842|GO:0016567
Gso11g0401 514 SMART Ubox_2 133 196 IPR003613 GO:0004842|GO:0016567
Gso11g0401 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 202 IPR013083 -
Gso11g0401 514 ProSiteProfiles U-box domain profile. 129 203 IPR003613 GO:0004842|GO:0016567
Gso11g0401 514 SUPERFAMILY ARM repeat 218 498 IPR016024 -
Gso11g0401 514 SUPERFAMILY RING/U-box 124 200 - -
Gso11g0401 514 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 102 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0401 Gso-Chr11 3510072 3512753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0401 66 514 U-box Gene Family AT3G49810 74.610 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0401 - - gmx:100816457 981.089