Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0395 ATGCTTTCTGCTCTTCCTTTTCAGGGAAACCCATTCCCGGCGTTGGACTACGCTTTCATGCCGTGGGATGGGCTTGACTCTTTGGGCTTCAAGCCCACCAGCCCCAATCCCGTCACTTCGAGTTCCGGCTCAGGCTACCCAAACCGAACCCATGCCGAAGAAAAACCGGCCTCGGACAAGTCGAACCACGTCACGTCCGTCATGGAGGAGCGGAAACGCAGGAGAATGATATCGAACCGGGAATCGGCCCGAAGGTCACGCATTCGTAAACAGAGACATCTTGAGAACTTACGGAACCAGATGAATCTATTTAGGGTTGAAAATCGAAAACTGAACAACGGGTTGCAGTTTCTCCTTCACCACTGTAACCGCCTGAGAACCGAAAACGAGTGGCTCCTGTCCGAACGACCCATGCTCCGTCAAAAACTAGCCAACATAAATCAAATTTTGCTTTTCCGACATTTGCAACCATTTTCCTCTGCATGGCCCTGCAATATTGTCTTGGCGGAATAA 513 0.5068 MLSALPFQGNPFPALDYAFMPWDGLDSLGFKPTSPNPVTSSSGSGYPNRTHAEEKPASDKSNHVTSVMEERKRRRMISNRESARRSRIRKQRHLENLRNQMNLFRVENRKLNNGLQFLLHHCNRLRTENEWLLSERPMLRQKLANINQILLFRHLQPFSSAWPCNIVLAE* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0395 170 MobiDBLite consensus disorder prediction 32 48 - -
Gso11g0395 170 PANTHER BZIP TRANSCRIPTION FACTOR 44 22 170 - -
Gso11g0395 170 Pfam bZIP transcription factor 71 130 IPR004827 GO:0003700|GO:0006355
Gso11g0395 170 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 69 132 IPR004827 GO:0003700|GO:0006355
Gso11g0395 170 MobiDBLite consensus disorder prediction 52 84 - -
Gso11g0395 170 MobiDBLite consensus disorder prediction 31 87 - -
Gso11g0395 170 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 74 89 IPR004827 GO:0003700|GO:0006355
Gso11g0395 170 PANTHER BZIP TRANSCRIPTION FACTOR 22 170 - -
Gso11g0395 170 CDD bZIP_plant_GBF1 72 123 IPR045314 GO:0003700|GO:0006355
Gso11g0395 170 SMART brlzneu 67 131 IPR004827 GO:0003700|GO:0006355
Gso11g0395 170 SUPERFAMILY Leucine zipper domain 71 123 IPR046347 GO:0003700|GO:0006355
Gso11g0395 170 Coils Coil 80 114 - -
Gso11g0395 170 Gene3D - 69 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0395 Gso-Chr11 3466020 3466703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0395 12 153 bZIP Transcription Factor Family AT3G49760 40.278 1.30e-29 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso11g0395 bZIP_1 6.7e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0395 - - gmx:102661188 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1684 1 53489441 53490277 Gso11g0395 11 3466020 3466703 GST
Gso11g0395 11 3466020 3466703 Gso5g0934 5 30590434 30591370 PCT
Gso11g0395 11 3466020 3466703 Gso17g1337 17 13649383 13650219 PCT
Gso5g0934 5 30590434 30591370 Gso11g0395 11 3466020 3466703 PCT
Gso17g1337 17 13649383 13650219 Gso11g0395 11 3466020 3466703 PCT