Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0394 ATGAAGCCTATAGAAAATGGCAATACCGTTAACATCAACTATCAAAATAGCTGGTTAGGCTTCTCCCTCTCCCCACAAATGATCAATATAGGTGTTCCTTCACACCTTCATCAGACACAGCCTTCACCCGCAGCTGTTGAAACTGTTCCACCAAGCTTTTATCATCATACACCTCTCCATAGCTATGGCTCTTACTATGGACTGGAAGGTGAACACGTTGGATTGAGTTCATCCTTGCCTATCATGCCCCTTAAATCCAATGTCTCTCTCTCTGGAATAGAAGCTCTGAGTAGATCACAAGCACAAGCAACGATAACTACTTCAGCAATGCATCCAAGGTTAAATAATATGCTTTACAACCAGCTCTTATGCCATGGACTAAACAATCCAAACAACTTAAATCACATTCAAGAGAATATCAGCCAGCAACAATTCTCGTATTACTCTACCTTAAGAAACCATGATATGATTTTAGAAGGTTCCAAGCACCAGCTCCCATGTATAGCTGAAGATGAAAATCCGGGTTTGAAGAGTTGGTTCTCAAGGGACTTCCCTGCTAGACATGGAGAAGAATCAAGGATGATTGTTCCTTTGGAGGACAATAATGGAGGCGAATCTGGATCCATTGGATCAATAACATATGGGGATTTGCATTCATTGAATTTGTCTGTGAGTCCTACCTCAGGATCAAGCTGTGTTACAAGTTCACCTGCTATCACTAATACTGTTGCCACTGATACCAAGAAAAGGGGGCTTCAAATGGTGGACCAGAATCAGAAGCAAATAGGTCATAGGAAATCCATAGATACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATACGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAGGAAGGAAAGGAAGGCAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATATGGCCGCACTCAAGTATTGGGGACCCTCCTCCCATATAAATTTCCCTTTGGAAAATTATCAAAACGAACTTGAGGAAATGAAGAACATGACGAGACAAGAATATGTAGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGGGCCTCCATGTACAGAGGAGTAACAAGGCACCACCAACACGGAAGGTGGCAAGCTCGAATTGGAAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGTACCCAAGAGGAAGCAGCTGAAGCCTATGACATTGCTGCTATTAAATTCAGAGGAGTTAATGCTGTTACAAACTTTGATATAACAAGATATGACGTGGAAAGAATTATGGAGAGCAATAACCTTCTTAGTAGTGAACAAGCTAAGCGGAAAAGAGAGATGGATGATGGAACTAGAAGCGAGGCTACAGTTAACCAAAAACCTTGTACTACTCAAGAAACCGTTCTGATGCAGAAAAGATGCAGAAGCCAATCAGAATGGAAGATGGTTCAGTATCCATCCTCCCAACAGCTTGATCAGAATCCACAAAGAATTGAGTGTAGTAGAACTGAGTCCTTGTCAACTGCTTTAGATAACATGTTTCATCACCAAGTTGAGGAATCGAGTAACATGGGAACACACTTGTCAAATCCTTCTTCTCTGGTGACAAGTTTGAGTAGCTCAAGAGAAGAGAGCCCAGATAAGACAAGCTTGCCAATGCTCTTTGGAATGCCTTCAACAGTGTCCAAATTATTGGCTGACGTGGATTCTTTGGATCTATCTTCCAATCTCAGGCCTTCGCTTTCTATTCCTCAGATGCCAATTTTTGCTGCTTGGACCGATGCATAA 1839 0.4214 MKPIENGNTVNINYQNSWLGFSLSPQMINIGVPSHLHQTQPSPAAVETVPPSFYHHTPLHSYGSYYGLEGEHVGLSSSLPIMPLKSNVSLSGIEALSRSQAQATITTSAMHPRLNNMLYNQLLCHGLNNPNNLNHIQENISQQQFSYYSTLRNHDMILEGSKHQLPCIAEDENPGLKSWFSRDFPARHGEESRMIVPLEDNNGGESGSIGSITYGDLHSLNLSVSPTSGSSCVTSSPAITNTVATDTKKRGLQMVDQNQKQIGHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQVYLGGYDMEEKAARAYDMAALKYWGPSSHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVERIMESNNLLSSEQAKRKREMDDGTRSEATVNQKPCTTQETVLMQKRCRSQSEWKMVQYPSSQQLDQNPQRIECSRTESLSTALDNMFHHQVEESSNMGTHLSNPSSLVTSLSSSREESPDKTSLPMLFGMPSTVSKLLADVDSLDLSSNLRPSLSIPQMPIFAAWTDA* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0394 612 SUPERFAMILY DNA-binding domain 276 345 IPR016177 GO:0003677
Gso11g0394 612 Pfam AP2 domain 380 429 IPR001471 GO:0003700|GO:0006355
Gso11g0394 612 Pfam AP2 domain 277 335 IPR001471 GO:0003700|GO:0006355
Gso11g0394 612 ProSiteProfiles AP2/ERF domain profile. 379 437 IPR001471 GO:0003700|GO:0006355
Gso11g0394 612 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 154 610 - -
Gso11g0394 612 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 118 - -
Gso11g0394 612 Gene3D AP2/ERF domain 276 345 IPR036955 GO:0003700|GO:0006355
Gso11g0394 612 Gene3D AP2/ERF domain 379 439 IPR036955 GO:0003700|GO:0006355
Gso11g0394 612 MobiDBLite consensus disorder prediction 455 470 - -
Gso11g0394 612 ProSiteProfiles AP2/ERF domain profile. 277 343 IPR001471 GO:0003700|GO:0006355
Gso11g0394 612 PRINTS Ethylene responsive element binding protein signature 278 289 IPR001471 GO:0003700|GO:0006355
Gso11g0394 612 PRINTS Ethylene responsive element binding protein signature 419 439 IPR001471 GO:0003700|GO:0006355
Gso11g0394 612 MobiDBLite consensus disorder prediction 539 564 - -
Gso11g0394 612 MobiDBLite consensus disorder prediction 539 569 - -
Gso11g0394 612 CDD AP2 378 439 IPR001471 GO:0003700|GO:0006355
Gso11g0394 612 CDD AP2 276 343 IPR001471 GO:0003700|GO:0006355
Gso11g0394 612 SMART rav1_2 379 443 IPR001471 GO:0003700|GO:0006355
Gso11g0394 612 SMART rav1_2 277 349 IPR001471 GO:0003700|GO:0006355
Gso11g0394 612 SUPERFAMILY DNA-binding domain 378 438 IPR016177 GO:0003677
Gso11g0394 612 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 154 610 - -
Gso11g0394 612 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 14 118 - -
Gso11g0394 612 Coils Coil 344 364 - -
Gso11g0394 612 MobiDBLite consensus disorder prediction 454 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0394 Gso-Chr11 3446104 3449912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0394 8 612 AP2-EREBP Transcription Factor Family AT4G37750 42.814 7.41e-143 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso11g0394 AP2 5.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0394 K09285 - gmx:100794433 1195.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1685 1 53499060 53502719 Gso11g0394 11 3446104 3449912 GST
Gso11g0394 11 3446104 3449912 Gso5g0936 5 30659891 30664295 PCT
Gso11g0394 11 3446104 3449912 Gso17g1333 17 13574921 13579702 PCT
Gso5g0936 5 30659891 30664295 Gso11g0394 11 3446104 3449912 PCT
Gso17g1333 17 13574921 13579702 Gso11g0394 11 3446104 3449912 PCT