Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0387 ATGGGTCTTGATCAGGATGCCAATAGCTCAGGCCTTCACCTCGTTCTAGGGCTTTCTTTGACTGCTAGTGTTAAGGAAACCGCTCCGTCCACCAAGCCCGATGATCATCATCTTTGTGTTATCAAGCCAACTCCAACGAAACCTTATCCTTCCAAAGAACCGTCTTTGACGTTGGGGCTGTCCGGTAAGGGTTACCACGTGCCCAGAAATAACGTTGCCATCAACAAGGTTTATTGTGAGGACCCTCTTGAGTTCTCTAGACAGACATCACCTCACAGTGTTGTTTCGTCTTTCTCAACTGGGAGGGTCATCAAGAGGGAGAGAGATCTTAGCTGTGAAGACATGGAGGTAGACGCAGAAGAAAGGGTTTCTTCACGAGTGAGTGATGAAGACGAAGATGGAACCAATGCTAGAAAGAAGCTCAGACTCACCAAAGAACAATCTGCACTGCTAGAAGAGAGCTTCAAACAACACAGCACTCTCAACCCCAAACAGAAGCAAGCTTTAGCCAGGCAGTTAAATCTCCGGCCTCGACAAGTTGAAGTGTGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGTGAGTTCTTAAAGAAATGCTGTGAAACATTGACGGACGAAAACAGGAGGCTAAAGAAGGAGCTGCAAGAGCTGAAGGCACTGAAACTAGCTCAACCCTTGTACATGCCTATGCCTGCTGCCACACTCACCATGTGCCCTTCTTGCGAGAGGCTCGGTGGCGTTAGCGATAACGGTTCGAATAAAAGCCCCTTCTCCATGGCTCCCAAGCCTCACTTCTATAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA 852 0.4871 MGLDQDANSSGLHLVLGLSLTASVKETAPSTKPDDHHLCVIKPTPTKPYPSKEPSLTLGLSGKGYHVPRNNVAINKVYCEDPLEFSRQTSPHSVVSSFSTGRVIKRERDLSCEDMEVDAEERVSSRVSDEDEDGTNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGVSDNGSNKSPFSMAPKPHFYNPFANPSAAC* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0387 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 8 283 - -
Gso11g0387 283 SUPERFAMILY Homeodomain-like 127 195 IPR009057 -
Gso11g0387 283 Gene3D - 142 192 - -
Gso11g0387 283 Pfam Homeodomain 138 192 IPR001356 GO:0003677
Gso11g0387 283 ProSitePatterns 'Homeobox' domain signature. 169 192 IPR017970 GO:0000981|GO:0006355
Gso11g0387 283 SMART HOX_1 136 198 IPR001356 GO:0003677
Gso11g0387 283 CDD homeodomain 138 195 IPR001356 GO:0003677
Gso11g0387 283 Coils Coil 200 230 - -
Gso11g0387 283 ProSiteProfiles 'Homeobox' domain profile. 134 194 IPR001356 GO:0003677
Gso11g0387 283 SMART halz 194 237 IPR003106 GO:0006355|GO:0043565
Gso11g0387 283 Pfam Homeobox associated leucine zipper 194 228 IPR003106 GO:0006355|GO:0043565
Gso11g0387 283 PANTHER - 8 283 - -
Gso11g0387 283 MobiDBLite consensus disorder prediction 27 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0387 Gso-Chr11 3358133 3359928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0387 1 283 Homeobox Transcription Factor Family AT4G37790 60.535 2.39e-99 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso11g0387 Homeodomain 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0387 K09338 - gmx:100795135 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1690 1 53594784 53596529 Gso11g0387 11 3358133 3359928 GST
Gso11g0387 11 3358133 3359928 Gso5g0943 5 30951447 30953154 PCT
Gso11g0387 11 3358133 3359928 Gso17g1327 17 13464679 13466494 PCT
Gso5g0943 5 30951447 30953154 Gso11g0387 11 3358133 3359928 PCT
Gso17g1327 17 13464679 13466494 Gso11g0387 11 3358133 3359928 PCT