Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0378 ATGCCCAAAATGCGTGTCCTCTTTGTTTTTCTGTTTTTCCATTTTCATTTCCCTGAAACCCTTTCTGCCCCAATCTCAGAGTACCGCGCCCTTCTCTCTCTCCGTTCAGTCATTACCGACGCCACACCACCCGTTCTCTCTTCTTGGAACGCCTCCATCCCTTACTGTTCCTGGCTCGGCGTCACCTGCGACAACCGCCGCCACGTCACCGCCCTCAACCTCACCGGCCTCGACCTCTCCGGCACGCTCTCTGCCGACGTCGCCCACCTCCCTTTCCTCTCCAACCTCTCCCTCGCCGCAAACAAATTCTCCGGCCCCATTCCTCCCTCTCTCTCCGCCCTCTCCGGCCTCCGCTACCTCAACCTCTCCAACAATGTCTTCAACGAAACCTTCCCCTCGGAGCTTTGGCGCCTCCAGAGCCTCGAGGTCCTCGACCTCTACAACAACAACATGACCGGCGTGCTCCCTCTTGCCGTCGCGCAGATGCAGAATCTTCGTCATTTGCATCTCGGCGGCAACTTCTTCTCCGGCCAGATCCCGCCGGAGTACGGACGCTGGCAGCGCCTCCAGTACCTCGCCGTCTCCGGCAACGAACTCGACGGGACTATCCCGCCGGAGATCGGAAACTTGACCAGCCTCCGGGAGCTCTACATCGGCTACTACAACACCTACACCGGCGGCATTCCGCCGGAGATCGGAAACTTGTCGGAGCTGGTGAGGCTTGACGCAGCGTACTGTGCGTTGTCCGGGGAGATTCCGGCGGCGCTTGGGAAGCTTCAGAAGCTGGACACGCTGTTCCTTCAGGTGAATGCATTGTCAGGATCACTGACGCCGGAGCTGGGGAACCTGAAGAGCCTGAAATCCATGGATTTGTCTAACAACATGCTCTCCGGTGAGATTCCGGCGAGTTTCGGCGAGCTGAAGAATATTACGCTTCTGAATCTGTTCAGGAACAAGCTTCATGGAGCTATACCGGAGTTTATAGGAGAGCTTCCAGCGTTGGAAGTTGTGCAACTGTGGGAAAATAACTTAACAGGTAGCATTCCTGAGGGTTTGGGCAAAAATGGGAGACTCAACCTTGTTGATCTTTCTTCTAACAAGTTAACCGGGACTTTGCCTCCTTATCTCTGTTCTGGGAATACTCTTCAGACTCTGATAACTCTTGGGAATTTTCTTTTCGGTCCAATTCCTGAGTCGCTCGGGACTTGTGAATCTCTTACACGGATTAGAATGGGAGAAAACTTTTTGAATGGTTCCATTCCTAAAGGGCTTTTTGGACTTCCCAAACTCACCCAGGTTGAACTTCAGGATAATTATCTCTCTGGAGAGTTTCCTGAGGTTGGTTCTGTTGCGGTTAATCTTGGTCAGATTACTCTCTCTAACAACCAGCTTTCTGGGGCTCTGTCTCCCTCCATTGGTAACTTCTCCAGCGTGCAGAAGCTCCTTCTTGATGGCAACATGTTCACCGGTCGGATACCTACACAGATTGGGAGGTTGCAACAGCTTTCTAAGATTGATTTTAGTGGCAACAAGTTCTCGGGTCCTATTGCGCCTGAGATCAGTCAGTGTAAGCTGTTAACTTTCCTGGACCTTAGCCGCAATGAGCTATCTGGAGACATCCCTAATGAGATAACTGGCATGAGGATATTGAATTACTTGAATCTTTCTAAGAATCATTTAGTGGGTAGCATTCCCTCTTCGATATCATCTATGCAAAGCTTGACTTCTGTTGATTTTTCATACAACAACCTGTCTGGTTTGGTGCCTGGTACCGGTCAATTCAGCTACTTCAACTACACGTCTTTCTTGGGAAACCCTGACCTGTGTGGCCCCTATTTGGGTGCTTGCAAGGGTGGGGTTGCCAATGGTGCACACCAACCTCATGTTAAAGGACTCTCCTCTTCTTTGAAGCTGCTACTTGTTGTTGGGTTGCTATTATGTTCCATTGCTTTTGCTGTGGCTGCAATATTCAAGGCCCGGTCATTAAAGAAGGCCAGTGAGGCTCGTGCATGGAAGTTGACTGCGTTCCAGCGTTTGGACTTCACTGTTGATGATGTTTTGCATTGCTTGAAAGAGGATAATATTATTGGGAAAGGAGGTGCTGGAATTGTCTACAAAGGGGCTATGCCTAATGGGGATCATGTTGCTGTGAAAAGGCTTCCAGCTATGAGTAGAGGCTCTTCCCATGATCACGGATTCAATGCTGAGATTCAGACATTGGGGCGAATCCGACACAGGCACATTGTTAGGTTGTTGGGTTTCTGTTCAAATCATGAGACAAACCTTTTGGTCTATGAGTACATGCCCAATGGAAGTTTAGGTGAGGTTCTTCATGGAAAAAAGGGGGGTCATTTGCATTGGGACACCAGGTATAAAATTGCGGTGGAGGCTGCCAAGGGGCTTTGCTATCTGCACCATGATTGTTCGCCACTCATTGTCCATCGTGATGTGAAGTCAAACAACATCCTTCTTGATTCAAATCATGAAGCCCATGTTGCTGATTTTGGGCTTGCTAAGTTCCTGCAAGATTCTGGGACATCTGAATGCATGTCTGCTATTGCTGGTTCATATGGATACATAGCTCCAGAGTATGCCTACACATTGAAAGTTGATGAGAAAAGCGATGTGTACAGTTTTGGTGTGGTTCTTTTAGAACTTATAACAGGCAGGAAACCAGTTGGTGAATTTGGTGATGGCGTGGACATCGTGCAATGGGTGAGGAAAATGACGGACTCTAACAAGGAAGGAGTTCTTAAAGTTCTTGATCCTAGGCTTCCCTCAGTTCCCCTTCACGAAGTGATGCATGTTTTCTATGTGGCCATGCTGTGTGTTGAAGAACAGGCTGTAGAGAGACCAACAATGCGTGAAGTTGTTCAAATACTGACCGAGCTTCCAAAGCCACCTGGCTCTAAAGAGGGAGACTTAACAATAACAGAATCCTCTTTGTCATCATCAAACGCTTTAGAATCTCCATCCTCAGCCTCCAAGGAAGATCAAAATCCTCCTCAATCCCCACCACCCGACCTTCTTAGTATTTAA 3039 0.4903 MPKMRVLFVFLFFHFHFPETLSAPISEYRALLSLRSVITDATPPVLSSWNASIPYCSWLGVTCDNRRHVTALNLTGLDLSGTLSADVAHLPFLSNLSLAANKFSGPIPPSLSALSGLRYLNLSNNVFNETFPSELWRLQSLEVLDLYNNNMTGVLPLAVAQMQNLRHLHLGGNFFSGQIPPEYGRWQRLQYLAVSGNELDGTIPPEIGNLTSLRELYIGYYNTYTGGIPPEIGNLSELVRLDAAYCALSGEIPAALGKLQKLDTLFLQVNALSGSLTPELGNLKSLKSMDLSNNMLSGEIPASFGELKNITLLNLFRNKLHGAIPEFIGELPALEVVQLWENNLTGSIPEGLGKNGRLNLVDLSSNKLTGTLPPYLCSGNTLQTLITLGNFLFGPIPESLGTCESLTRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYLSGEFPEVGSVAVNLGQITLSNNQLSGALSPSIGNFSSVQKLLLDGNMFTGRIPTQIGRLQQLSKIDFSGNKFSGPIAPEISQCKLLTFLDLSRNELSGDIPNEITGMRILNYLNLSKNHLVGSIPSSISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGACKGGVANGAHQPHVKGLSSSLKLLLVVGLLLCSIAFAVAAIFKARSLKKASEARAWKLTAFQRLDFTVDDVLHCLKEDNIIGKGGAGIVYKGAMPNGDHVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNHEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPGSKEGDLTITESSLSSSNALESPSSASKEDQNPPQSPPPDLLSI* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0378 1012 SUPERFAMILY RNI-like 72 409 - -
Gso11g0378 1012 Gene3D Ribonuclease Inhibitor 22 86 IPR032675 -
Gso11g0378 1012 Gene3D Ribonuclease Inhibitor 87 354 IPR032675 -
Gso11g0378 1012 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 6 1002 - -
Gso11g0378 1012 SUPERFAMILY L domain-like 300 616 - -
Gso11g0378 1012 Pfam Leucine Rich Repeat 285 307 IPR001611 GO:0005515
Gso11g0378 1012 Pfam Leucine Rich Repeat 164 180 IPR001611 GO:0005515
Gso11g0378 1012 ProSiteProfiles Protein kinase domain profile. 690 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0378 1012 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 1002 - -
Gso11g0378 1012 Pfam Protein tyrosine and serine/threonine kinase 692 961 IPR001245 GO:0004672|GO:0006468
Gso11g0378 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Gso11g0378 1012 Gene3D Transferase(Phosphotransferase) domain 1 768 974 - -
Gso11g0378 1012 Gene3D Phosphorylase Kinase; domain 1 656 767 - -
Gso11g0378 1012 MobiDBLite consensus disorder prediction 974 999 - -
Gso11g0378 1012 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Gso11g0378 1012 Pfam Leucine rich repeat 93 150 IPR001611 GO:0005515
Gso11g0378 1012 MobiDBLite consensus disorder prediction 964 1012 - -
Gso11g0378 1012 SUPERFAMILY Protein kinase-like (PK-like) 686 961 IPR011009 -
Gso11g0378 1012 SMART serkin_6 690 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0378 1012 SMART LRR_typ_2 571 594 IPR003591 -
Gso11g0378 1012 SMART LRR_typ_2 162 186 IPR003591 -
Gso11g0378 1012 SMART LRR_typ_2 283 307 IPR003591 -
Gso11g0378 1012 SMART LRR_typ_2 331 355 IPR003591 -
Gso11g0378 1012 SMART LRR_typ_2 114 137 IPR003591 -
Gso11g0378 1012 SMART LRR_typ_2 138 161 IPR003591 -
Gso11g0378 1012 Gene3D Ribonuclease Inhibitor 356 619 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0378 Gso-Chr11 3276402 3280891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0378 14 991 Receptor kinase-like Gene Family AT5G65700 80.446 0.0 1586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso11g0378 PK_Tyr_Ser-Thr 5.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0378 - - gmx:548032 1969.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1699 1 53682955 53686811 Gso11g0378 11 3276402 3280891 GST
Gso11g0378 11 3276402 3280891 Gso5g0950 5 31125399 31129453 PCT
Gso11g0378 11 3276402 3280891 Gso17g1320 17 13299542 13303515 PCT
Gso5g0950 5 31125399 31129453 Gso11g0378 11 3276402 3280891 PCT
Gso17g1320 17 13299542 13303515 Gso11g0378 11 3276402 3280891 PCT