Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0377 ATGATGGAAATTGCGAACCACTACTACTTGCCTGAACTTGGAATTGAGGATCCAACCTTGTTTGATCAATACCCGATGGATTCATTTGCATGTCCACTCGATGACTTTGACTTCGAGTCTTTCTCCGGGTCCCCAGAGAGCAACTCCTCTTATCAGTTCAACTCCGAAAGCACACCAAATTGTTTCCCTGCTGAAAGTCCTGATCAGTCTTTTGTCCCTGCAAGACCAACCAAGAGGCTCAAGACATTCAATACCTCCAACACTTGTGCCAGTGACATAATTTCCCACAAGGTTTCTGCCTCTTCATCCTCCCAAGTTATTTCCTTTGACCACTTCAATGCCCCATCAGATGCTTCTTCCCTGCAATTTCATCGAAACCTGGACTTCGATGTGAAGCCGAAAATCGAGAAAGCGTCTAGTGGGAACATGGATTTTGCAGCTTTCGTTTCTCACGGTTCGTATGTGGACAAAACATTCCTAAGTTCTGATACGAATCAGGTTGGAATAACCTCTAGGAACCCAATCCAAGCTCAAGAGCACGTAATAGCTGAAAGAAAACGGAGGGAAAAGCTCAGCCAGAGGTTCATTGCTCTTTCCGCCATCCTCCCTGGCCTCAAGAAGATGGATAAGGCTTCTGTTTTGGGAGATGCTATAAAGTATGTGAAACAACTACAAGAACGTGTGCAAACTCTGGAGGAGCAAGCAGCGAAGAGAACAGCAGGGTCGAGAGTGCTGGTGAAAAGATCTATTCTCTTTGCTGATGATGAAAATTCTGACAGCCACTGCGAGCATTCACTCCCAGAAATCGAAGTCAGAGTTTCTGGGAAAGACGTACTCATCAGAACTCAATGCGACAAACACAGTGGACATGCTGCAATGATACTCAGCGAGTTAGAAAAGCTTCACTTCATTGTCCAGAGTAGCAGCTTTTTGCCCTTCGGCAATAACAATACTGATGTAACTATTATTGCTCAGATGAACAAGGAAAACTGCATGACAGCAAAGGATCTCCTAGGAAGGCTACGACAGGCGTTGAAGCAGTTCATTTGA 1050 0.4505 MMEIANHYYLPELGIEDPTLFDQYPMDSFACPLDDFDFESFSGSPESNSSYQFNSESTPNCFPAESPDQSFVPARPTKRLKTFNTSNTCASDIISHKVSASSSSQVISFDHFNAPSDASSLQFHRNLDFDVKPKIEKASSGNMDFAAFVSHGSYVDKTFLSSDTNQVGITSRNPIQAQEHVIAERKRREKLSQRFIALSAILPGLKKMDKASVLGDAIKYVKQLQERVQTLEEQAAKRTAGSRVLVKRSILFADDENSDSHCEHSLPEIEVRVSGKDVLIRTQCDKHSGHAAMILSELEKLHFIVQSSSFLPFGNNNTDVTIIAQMNKENCMTAKDLLGRLRQALKQFI* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0377 349 PANTHER BHLH TRANSCRIPTION FACTOR 1 348 - -
Gso11g0377 349 MobiDBLite consensus disorder prediction 43 68 - -
Gso11g0377 349 Pfam Helix-loop-helix DNA-binding domain 178 225 IPR011598 GO:0046983
Gso11g0377 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Gso11g0377 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 241 IPR036638 GO:0046983
Gso11g0377 349 Gene3D - 176 243 IPR036638 GO:0046983
Gso11g0377 349 CDD bHLH_AtNAI1_like 177 249 - -
Gso11g0377 349 Coils Coil 214 241 - -
Gso11g0377 349 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 348 - -
Gso11g0377 349 MobiDBLite consensus disorder prediction 43 65 - -
Gso11g0377 349 SMART finulus 181 230 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0377 Gso-Chr11 3262819 3265288 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0377 2 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.375 1.08e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g0377 HLH 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0377 - - gmx:100791810 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1700 1 53698111 53700696 Gso11g0377 11 3262819 3265288 GST
Gso11g0377 11 3262819 3265288 Gso5g0953 5 31198406 31201942 PCT
Gso11g0377 11 3262819 3265288 Gso17g1318 17 13259467 13262478 PCT
Gso5g0953 5 31198406 31201942 Gso11g0377 11 3262819 3265288 PCT
Gso17g1318 17 13259467 13262478 Gso11g0377 11 3262819 3265288 PCT