Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0376 ATGGACGACGCATCAGAAGCCAGCTGGTTATCTGATTTGATGTTGAAGGAAACGGAGGATTGCAACTTGTTCCGACACAGTCACCTTGAGACGTTGCTCGACGATGATGACGAGTTACTTTCGCATGAGATAGCAAGTGCCTTTGAGAACTTGCACCAACCTTTGTATTCGGAGACTTTTGAAAGGTCCACCAAGCAGCCCAAAACGAATGCCTCTTCCTCCCCTTCTTCTCCAACCTCCAAGATTCTTCTGTCTTTCGACAACTCCTCCGATTCTGCTGCCTTAAGCCCAAATCAGATCAAGAACAAAGGTGTTTCAGTTTCAGTTTCACTACCACAAACCCGAAAACGTTCATCAGAAAACCACAACTTTCAAACTGAAAGCCCCAAAGGCCCAAGAAGCTACAAGTCCCCATCTTACGCTCGGGATCACATCATCGCCGAGAGAAAACGAAGAGAGAAGCTCAGCCAGAGCTTAATCGCTCTAGCTGCTCTTATTCCCGGCTTAAAGAAGATGGACAGGGCATCGGTGCTGGGAAATGCTATAAAGTACGTGAAAGAGCTGCAAGAGCGTCTGAGAATGCTTGAAGAAGAGAACAAGGTGATGGTGAACAAAGCAAAGCTCAGCTGCGAAGACGATATCGATGGTTCAGCTTCACGTGAAGATGAAGAAGGCAGTGAAAGACTCCCCCGTGTGGAAGCGAGAGTGTCAGAGAAGGACGTGCTCCTTCGGATCCACTGCCAAAAGCAGAAGGGGCTTTTGCTCAAAATACTTGTCGAGATTCAAAAATTCCATCTCTTTGTTGTCAGTAGCAGTGTCCTTCCTTTCGGGGATTCCATACTTGACATAACCATTGTTGCTCAGATGGAAAAGGGGTACAATTTGACCATTAATGATATTGTAAAAAACCTACGCGTGGCTACTTTGAAATCCATGTCATAA 942 0.4607 MDDASEASWLSDLMLKETEDCNLFRHSHLETLLDDDDELLSHEIASAFENLHQPLYSETFERSTKQPKTNASSSPSSPTSKILLSFDNSSDSAALSPNQIKNKGVSVSVSLPQTRKRSSENHNFQTESPKGPRSYKSPSYARDHIIAERKRREKLSQSLIALAALIPGLKKMDRASVLGNAIKYVKELQERLRMLEEENKVMVNKAKLSCEDDIDGSASREDEEGSERLPRVEARVSEKDVLLRIHCQKQKGLLLKILVEIQKFHLFVVSSSVLPFGDSILDITIVAQMEKGYNLTINDIVKNLRVATLKSMS* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0376 313 Pfam Helix-loop-helix DNA-binding domain 144 189 IPR011598 GO:0046983
Gso11g0376 313 PANTHER BHLH TRANSCRIPTION FACTOR 47 311 - -
Gso11g0376 313 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 204 IPR036638 GO:0046983
Gso11g0376 313 SMART finulus 145 194 IPR011598 GO:0046983
Gso11g0376 313 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Gso11g0376 313 Coils Coil 178 205 - -
Gso11g0376 313 MobiDBLite consensus disorder prediction 60 83 - -
Gso11g0376 313 MobiDBLite consensus disorder prediction 104 140 - -
Gso11g0376 313 PANTHER BHLH TRANSCRIPTION FACTOR 47 311 - -
Gso11g0376 313 MobiDBLite consensus disorder prediction 104 133 - -
Gso11g0376 313 Gene3D - 134 205 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0376 Gso-Chr11 3249851 3252732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0376 9 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.602 3.38e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g0376 HLH 5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0376 - - gmx:100776539 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1702 1 53717954 53720831 Gso11g0376 11 3249851 3252732 GST
Gso11g0376 11 3249851 3252732 Gso5g0954 5 31257297 31259906 PCT
Gso11g0376 11 3249851 3252732 Gso17g1317 17 13238250 13240797 PCT
Gso5g0954 5 31257297 31259906 Gso11g0376 11 3249851 3252732 PCT
Gso17g1317 17 13238250 13240797 Gso11g0376 11 3249851 3252732 PCT