Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0372 ATGGCTGCAGAGATTGGCCTAGTCTCCATGACCCAGATCCAAAACCTATCGCAACCCCAACACCCCAAAACCCAACAACAACAACAACCTCAACCAAAAAACCCTAACAGCACCACCACCACCTCCTCTTCTACTTGGATGTGGAACCCTAGGAAGCAACAACATCAGCAGCAGCAGGTAGAAGATGATGATGACTCTTGGGAGGTCAGAGCTTTTGCAGAAGACACAAGGAACATCATGGGCACCACATGGCCTCCTAGGTCCTACACCTGCACCTTCTGCAGAAGGGAGTTTCGCTCCGCCCAAGCCCTCGGCGGCCACATGAACGTCCACCGCCGCGACCGCGCTCGCCTCCACCAAGCTCCAGTACCCTCCTCCTCCTCCAACCCCATGACCTCTTCTCTTCCCACTTCACCCTTCATCAATATCCCTCCTCAAGACCTTGTTGCAAATGCTGGCTTGTGCCTCCTCTACCACTTGCCCAAAAGCCCTAGTAGTACTGCACCACCCTTCCCACCTTCCCCCACTACTCCTTCTCCTTCCACTCTTCTCTCTATCTCTTCTTATCCTACAACCAACTTTCTGATGCAAACTTCCTTTAATTTTCCCGGTGCACCCGCAACTGGGATCAATACTACTACTACTACTACTGTTTCCTCTTTGTGCTATAACTCTAGCAAAGTGGAACAATCCGCAACTTCCTCCTCTATTGATCATAATGGCCACCTCGAAGAGCTTGATCTAGAGCTCCGCCTAGGCCACAAACCAACACCAACCTCATAA 783 0.5134 MAAEIGLVSMTQIQNLSQPQHPKTQQQQQPQPKNPNSTTTTSSSTWMWNPRKQQHQQQQVEDDDDSWEVRAFAEDTRNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQAPVPSSSSNPMTSSLPTSPFINIPPQDLVANAGLCLLYHLPKSPSSTAPPFPPSPTTPSPSTLLSISSYPTTNFLMQTSFNFPGAPATGINTTTTTTVSSLCYNSSKVEQSATSSSIDHNGHLEELDLELRLGHKPTPTS* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0372 260 MobiDBLite consensus disorder prediction 8 55 - -
Gso11g0372 260 SUPERFAMILY beta-beta-alpha zinc fingers 86 116 IPR036236 -
Gso11g0372 260 Gene3D Classic Zinc Finger 80 133 - -
Gso11g0372 260 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Gso11g0372 260 SMART c2h2final6 89 111 IPR013087 -
Gso11g0372 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Gso11g0372 260 MobiDBLite consensus disorder prediction 1 65 - -
Gso11g0372 260 Pfam C2H2-type zinc finger 89 113 - -
Gso11g0372 260 PANTHER OS07G0101800 PROTEIN 47 253 - -
Gso11g0372 260 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 47 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0372 Gso-Chr11 3207316 3209090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0372 42 256 C2H2 Transcription Factor Family AT4G17810 38.914 2.80e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g0372 zf-C2H2_6 5.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0372 - - gmx:100790748 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1704 1 53772051 53773441 Gso11g0372 11 3207316 3209090 GST
Gso11g0372 11 3207316 3209090 Gso5g0958 5 31502789 31504033 PCT
Gso11g0372 11 3207316 3209090 Gso17g1314 17 13168772 13170557 PCT
Gso5g0958 5 31502789 31504033 Gso11g0372 11 3207316 3209090 PCT
Gso17g1314 17 13168772 13170557 Gso11g0372 11 3207316 3209090 PCT