Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0371 ATGGCTGGTTTGGATTTAAGCACGGCTTCACCCTTCGTCCAAAGTCTCCACAGACCAGACTTCAACCAACAACACGATTCCGGAGAAGACGCCAAACAATCAGCAGAAGATGGGCCACATCACCAGGGCGATGTGGTGGGGCGGCGCCCGCGGGGGCGTCCGGCGGGGTCCAAGAACAAGCCGAAGCCGCCGGTCATCATAACGCGGGAGAGCGCCAACACGCTCCGCGCCCACATCCTCGAAGTCGCCAACGGCTGCGACGTCTTCGAAAGCGTAGCCAGCTACGCACGCCGCCGCCAGCGCGGGATCTGTATTCTCAGCGGCAGCGGAACGGTTACGAATGTGAGCCTCCGGCAGCCGGCGTCGGCGGGGGCGGTGGTCACGCTTCACGGCAGGTTCGAGATACTGTCCCTGACGGGATCGTTCCTTCCTCCGCCGGCGCCGCCGGGGGCGACGAGTCTCAGCATATACCTCGCCGGAGGACAGGGGCAGGTGGTGGGTGGGAGTGTGGTCGGAGAGTTGATCGCTGCGGGACCGGTGATTGTGATGGCGGCGTCGTTCACGAACGTGGCCTATGAAAGGTTACCGTTGGAGGAAGAAGAAGAACAGGTTGAGATATCTGGTGTTGCTGGTAATAATAGTAACCCCTTTCCTGATCCTTCTTCGGGACTTCCTTTCTTCAATTTGCCAATGAATGTTCAGTTGCCTGTGGATGCCTGGGCGGGAAACTCAACTACACGTTCACCATTTTGA 753 0.595 MAGLDLSTASPFVQSLHRPDFNQQHDSGEDAKQSAEDGPHHQGDVVGRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEVANGCDVFESVASYARRRQRGICILSGSGTVTNVSLRQPASAGAVVTLHGRFEILSLTGSFLPPPAPPGATSLSIYLAGGQGQVVGGSVVGELIAAGPVIVMAASFTNVAYERLPLEEEEEQVEISGVAGNNSNPFPDPSSGLPFFNLPMNVQLPVDAWAGNSTTRSPF* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0371 250 MobiDBLite consensus disorder prediction 22 48 - -
Gso11g0371 250 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 23 250 IPR014476 GO:0003680
Gso11g0371 250 Gene3D - 75 210 - -
Gso11g0371 250 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 23 250 - -
Gso11g0371 250 ProSiteProfiles PPC domain profile profile. 72 212 IPR005175 -
Gso11g0371 250 MobiDBLite consensus disorder prediction 1 66 - -
Gso11g0371 250 CDD DUF296 76 159 IPR005175 -
Gso11g0371 250 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 189 IPR005175 -
Gso11g0371 250 SUPERFAMILY AF0104/ALDC/Ptd012-like 72 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0371 Gso-Chr11 3187923 3189355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0371 1 250 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 64.384 2.02e-97 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0371 - - gmx:100810911 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1705 1 53791637 53792875 Gso11g0371 11 3187923 3189355 GST
Gso11g0371 11 3187923 3189355 Gso5g0959 5 31612209 31613767 PCT
Gso11g0371 11 3187923 3189355 Gso17g1312 17 13123124 13126571 PCT
Gso5g0959 5 31612209 31613767 Gso11g0371 11 3187923 3189355 PCT
Gso17g1312 17 13123124 13126571 Gso11g0371 11 3187923 3189355 PCT