Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0369 ATGAATTCTCGTGAACAGCCTCAGCCACAACAGCCACCGCAACCACAACCGCCAAACATGACGGTGGGACCCACCATGTACCCTTCGATGTTGTCCCCCGTCACCGCCAGATTCCCATTCAGCAGCAGCAGCAACAACAATCCTCCTCCTTCGGAGCCTCTCAACAACGACACCAACGACAATGATAACAGCGCGTTCGAGGCGTTGAAGCCTTGCGCGCTGGCCGCCTCGGAATCGTCGAAGAAGAAGCGGGGCCGCCCAAGAAAATACTCGCCCGATGGCAACATTGCGTTGGGCCTCGGCCCAACCCATGCTCCCGCTTCCTCCGCCGATCCTCCCGCCAAAAAACATCGCGGTCGCCCCCCTGGTTCCGGCAAGAAGCAGATGGACGCTCTTGGAATTCCTGGAACTGGTTTTACTCCCCATGTTATCACCGCCGAAGTTGGCGAGGATATTGCTGCAAAGCTTGTGGCCTTTTGTGAGCAAGGACCTCGGACAGTTTGCACTCTTTCTGCTAATGGTGCAACCCGCAATGTCACCATTCGAGCACCAGACATGCCCGCGGGTACTGTGGCCTATGAGGGTCCATTTGAAATTATATCACTTAAAGCTGCTACGCTACAATCTGACAATAACAGAATGGCTGCATTGAGTGTGAGTTTAGCAGGTCCTGATGGACGAGTATTGGGTGGTGAAGTTGTTGGAGCCCTTACTGCAGCAACGGCAGTGCAGATCGTTCTGGGTAGCTTTATTGCTGATGGAAAAAAGTCTAGCTCAAGTTACCTGAAATCTGGACGTTCTTTGACACCATCATCCCAGATGTTAGCCTTTGGTGCTTCTCGGACTCCAACTACTCCTACCTCTCAAGGGCCTTCAACTGAGTCATCTGAAGATAATGAGAATAGTCATTTTAGTCAGGGGCCAGGAGGCCCTGGACTATACGATAATAATGCTAGCCAGCCGATTCATACCATGCCGATGTACCAACATCAATTATGGGCTGGCCATACTCAGCAGTGA 1020 0.5235 MNSREQPQPQQPPQPQPPNMTVGPTMYPSMLSPVTARFPFSSSSNNNPPPSEPLNNDTNDNDNSAFEALKPCALAASESSKKKRGRPRKYSPDGNIALGLGPTHAPASSADPPAKKHRGRPPGSGKKQMDALGIPGTGFTPHVITAEVGEDIAAKLVAFCEQGPRTVCTLSANGATRNVTIRAPDMPAGTVAYEGPFEIISLKAATLQSDNNRMAALSVSLAGPDGRVLGGEVVGALTAATAVQIVLGSFIADGKKSSSSYLKSGRSLTPSSQMLAFGASRTPTTPTSQGPSTESSEDNENSHFSQGPGGPGLYDNNASQPIHTMPMYQHQLWAGHTQQ* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0369 339 Gene3D - 141 263 - -
Gso11g0369 339 MobiDBLite consensus disorder prediction 35 65 - -
Gso11g0369 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 307 IPR039605 GO:0003680
Gso11g0369 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 47 307 - -
Gso11g0369 339 MobiDBLite consensus disorder prediction 8 22 - -
Gso11g0369 339 SMART AT_hook_2 115 127 IPR017956 GO:0003677
Gso11g0369 339 SMART AT_hook_2 81 93 IPR017956 GO:0003677
Gso11g0369 339 MobiDBLite consensus disorder prediction 277 321 - -
Gso11g0369 339 CDD DUF296 140 250 IPR005175 -
Gso11g0369 339 ProSiteProfiles PPC domain profile profile. 136 272 IPR005175 -
Gso11g0369 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 141 250 IPR005175 -
Gso11g0369 339 MobiDBLite consensus disorder prediction 1 135 - -
Gso11g0369 339 MobiDBLite consensus disorder prediction 277 306 - -
Gso11g0369 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 138 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0369 Gso-Chr11 3171579 3175569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0369 81 339 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 43.689 1.86e-67 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0369 - - gmx:100789687 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1706 1 53804398 53808045 Gso11g0369 11 3171579 3175569 GST
Gso11g0369 11 3171579 3175569 Gso5g0962 5 31628129 31633333 PCT
Gso11g0369 11 3171579 3175569 Gso17g1310 17 13103274 13109572 PCT
Gso5g0962 5 31628129 31633333 Gso11g0369 11 3171579 3175569 PCT
Gso17g1310 17 13103274 13109572 Gso11g0369 11 3171579 3175569 PCT