Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0366 ATGAAGAATAAAAACAGTCGAGCTAATCGGAAAGCTCGTTCGGTGAAACCCCCCGATTCCTGTTTATCTTCTTCCAATTCAAACAAGAAATGGATGGTTCCCTATAAATTCTACGATGTCAAGGGTCCCAATTCCGAGTCAAACCCTAATGTTGACTCGTCTAGTTGGGTTTTGTGCACCGAGGTTCAATTGGAAACCATTCTGTTGAAAAACATTGAAATTATATACAATGACACTGTGCCAAAGCTTGTTGCTTTGGGCTACAGTGAGGAGATTGCTGTCAAAGCGATTCTGTACAATGGACATTGTTACGGTGCCAATGATTTGGCAACAAACGTGCTGCACAACTCCTTGGCTTGTTTGACAACGGGGACCTTGGACTTGTCTGAGTCCAGCCCTGCGTTCCCTGATATGAAGAAGCTTCAGGAGTACTCTTTGATGAACCTTGTGTCTTTGTTGAAAGAGGTGAGGCCCGATTTAAGTAGGGGTGATGCTATGTGGTGTCTCCTCATGAGCAATTTCCATGTGTTGAAGGCGGGCGCCATCCCGGTTCCTGTTGGAAACACGTGCCCTCCTCCTCCTCCTCCTTTGCCCGAGCTTGAGAACACGGGATGGAGATTTGCGAAAGAGGGAGGCTTGGGTTTTCCTTTGAATGGGCTCTTTTCTGATACTGATATGACTATACGGTTACAGAGAGATATTGAATTCCCAAAAAGATTTGACCTTACTCCTGCCATGAAAAGCTTGTTGAAAAGAAATGTTGCAATGTTTGCTGATGGTTTTAGGGCTAACTCAAAACAGGTGCAGCCGCAAGCCAGTGAATTTCCTAGGACTGGCTCTGTTTCGAAATTGGGTTCTTCATCTGCTTCTGGGACTGCTGCAGTCCTTGGTGAGCAGCCTGGTGACTCTCACAATCAGAATGACCAGGAGGACTTGAACTCTGTGATGAGTAAATTTCTTGATCTAAATATTGATGATAATGTGGAGTTTGTGCCAGAAGACGACAAGGAGGAGGTGATAGTCACTCTAGTTAATCAGATAAAGGATCTTGAGAAACAGGTCAAGGAGCGGAAAGATTGGGCTCATGAGAAGGCAATCCAAGCGGCAAAAAAGCTAAGCAGTGATCTGATTGAGCTGAAAAAGTTCAAGATGGAAAGAGAGGAGAATAAAAAACTGCCGAAGGAGACAGGGGCAGCTGAGGAGCTGGACAACCCAACCATGATGAGACTCTCAGAAATGGAGAATGCCTTGAGAAAGACTAGTGGTCAAATGGACCAAGCAACTGCAGCTGTCAGAAAACTTGAGGCGGAGAAAGCTGAAATCAAAGCAGAGTTAGAGGCTTCTAAATTAAGTGCATCAGAGTCAGTCACAAGCTGTTTGCAAGTTGCAAAAAGGGAGAAAAAGTGCTTAAAGAAGCTTCTGACTTGGGAAAAACAGAAAGTAAAGATACATCAGGATATTTCAGATGAAAAACAGAAGATATTGGAGATACAAGAAGAACTAGCTCAGATTAAACAGTGTGCAAAGGAAACTGAGGTAACGAGGAAGGAAGAGTTGAAGGCTAAGGAAGAAGCCTTGGCACTAATTGAAGAGGAGCGCCGTTCTAAGGAAGCAGCTGAGGCTAATCATAAAAGAAATCTTAAAGCTTTACGCCTGAAGATAGAGATAGATTTCCAGCGTCGTAAGGATGATCTCCTTAGGCTGGAGCAGGAGATTTCACGCCTTAAAGCACCTGCACGGTCTACTACTTTGCCTACAAGTGAGTCTGAGGATGCAGAGCCCCAGAGAGAGACACTTGCTAAGCTTCTGCTAGAGTTAGATAATGTGAAGGATTTTTCTGGAAAAGAAATCAACGGTGATAGAGAATGCATTATATGTGGAAAGGATGAAGTTTCAGTTATTTTCTTGCCATGTGCACACCAAGTTATGTGTGCTCGTTGCGGTAAAGAGTATGGGAAAAAGGGTAAAGCTGTTTGTCCATGCTGCCGGGTTCCAATTGAAGAGAGAATTCCTATATTTGGGGCATGTTCGTAG 2034 0.4405 MKNKNSRANRKARSVKPPDSCLSSSNSNKKWMVPYKFYDVKGPNSESNPNVDSSSWVLCTEVQLETILLKNIEIIYNDTVPKLVALGYSEEIAVKAILYNGHCYGANDLATNVLHNSLACLTTGTLDLSESSPAFPDMKKLQEYSLMNLVSLLKEVRPDLSRGDAMWCLLMSNFHVLKAGAIPVPVGNTCPPPPPPLPELENTGWRFAKEGGLGFPLNGLFSDTDMTIRLQRDIEFPKRFDLTPAMKSLLKRNVAMFADGFRANSKQVQPQASEFPRTGSVSKLGSSSASGTAAVLGEQPGDSHNQNDQEDLNSVMSKFLDLNIDDNVEFVPEDDKEEVIVTLVNQIKDLEKQVKERKDWAHEKAIQAAKKLSSDLIELKKFKMEREENKKLPKETGAAEELDNPTMMRLSEMENALRKTSGQMDQATAAVRKLEAEKAEIKAELEASKLSASESVTSCLQVAKREKKCLKKLLTWEKQKVKIHQDISDEKQKILEIQEELAQIKQCAKETEVTRKEELKAKEEALALIEEERRSKEAAEANHKRNLKALRLKIEIDFQRRKDDLLRLEQEISRLKAPARSTTLPTSESEDAEPQRETLAKLLLELDNVKDFSGKEINGDRECIICGKDEVSVIFLPCAHQVMCARCGKEYGKKGKAVCPCCRVPIEERIPIFGACS* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0366 677 MobiDBLite consensus disorder prediction 1 25 - -
Gso11g0366 677 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 676 - -
Gso11g0366 677 ProSiteProfiles Zinc finger RING-type profile. 623 663 IPR001841 -
Gso11g0366 677 MobiDBLite consensus disorder prediction 266 309 - -
Gso11g0366 677 PANTHER OS05G0141500 PROTEIN 2 676 IPR046934 -
Gso11g0366 677 SUPERFAMILY RING/U-box 615 670 - -
Gso11g0366 677 Pfam Family of unknown function (DUF6592) 71 179 IPR046527 -
Gso11g0366 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 674 IPR013083 -
Gso11g0366 677 Coils Coil 333 353 - -
Gso11g0366 677 Coils Coil 519 542 - -
Gso11g0366 677 Coils Coil 410 451 - -
Gso11g0366 677 Pfam Zinc finger, C3HC4 type (RING finger) 620 668 - -
Gso11g0366 677 Coils Coil 487 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0366 Gso-Chr11 3149963 3153650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0366 623 673 C3H Transcription Factor Family AT1G73950 43.137 1.41e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0366 - - gmx:100789166 1246.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0366 11 3149963 3153650 Gso5g0968 5 31813132 31820387 PCT
Gso11g0366 11 3149963 3153650 Gso17g1303 17 13012305 13018203 PCT
Gso5g0968 5 31813132 31820387 Gso11g0366 11 3149963 3153650 PCT
Gso17g1303 17 13012305 13018203 Gso11g0366 11 3149963 3153650 PCT