Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0357 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTCCCAAAGGGACTTAGAGTTCTTCTGCTTGAAGGAGATAGTAGTTCTGCTGCTGAGATAAGAGAACAACTTGAGGCCATGGACTATAAGGTTTCCACTTTCTACGACGAGAATGAAGCCTTGTCAGCACTCTCAAGTAGTCCTAAAGGCTTCCATGTTGCCATAGTGGAGGTGAGTACAAGCTGTAGCCTTGGAGGTTTCAAATTTCTTGAGAATGCAAAGGACTTGCCTACCATTATGACTTCAAAGGACCAGTGTCTGAACACCATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTTCTCAGTAAACCACTCTCTGAGGACAAGCTCAAGAATATTTGGCAGCATGTTGTTCACAAGGCATTTAATTCTGGGGAAAATGTCCTTTCTGAATCACTAAAACCTGTCAAAGAATCTGTAGAATCCATGCTGCAGCTCCAAACAGACATTGGACAAGATAAAAGTAGGATTTCAATTGATTTAGAGAATGTGTCGAGGTTTAGTGATAATGACCATGAGCAGTCTGCTGTATGTGATAAATATCCGGCTCCGTCAACCCCTCAATTAAAGCAGGGGACAAGGTTACTGGATGATGGAGATTGCCATGAGCAGACTAATTGCTCAACAGAAAAAGAAAGTGGGGAACATGATAGGGAATGTAAATCTGTCGAAACTTCATGTGGGAATTTGAATGCCGAAAGTTCTCCTCAGCCAAGGGAACCTGATAAGACTCTGATTAGGGAGGAAGATGATTTTGCCAATGTTTCCAAGGGTGAGAGCGCTGTTTCACTGAATCCACATAATAAAAAGTTTCTCAGCAATGCCGATGGTAATACATCTCCAAATAAAACGGGTGTACTTAATGATTCATGTGAGATTAAAGCTAATCGGAAGAAGGTGAAAGTAGACTGGACACCTGAGCTGCATAAAAAATTTGTAAAGGCTGTCGAACAACTAGGTATTGATCAAGCCATTCCTTCTAGAATATTGGAGATAATGAAAGTGGAAGGTTTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATACACAAGAGACAAAGTGCACCCAGGGAAGAAGATCGGAAATGGCATAATCAAGGGGATGCAATGCAAAGGAACTATTATATGCAAAGACCAATCATGGCATACCCTCCATATCATTCACATCACACCCTTTCTCCAGCTCCTATATATCCTATGTGGGGACAACCTGGCAGTCAAACAGCCGGTGTACAGATTTGGGGCCATCCTGGTTATCCCATGTGGCATCCTACAGAAAGTTGGCACTGGAAGCCTTATCCGGGGGTGCATGTGGATGCTTGGGGATGCCCGTTGGTGCCACCTCCTCAAGCTCCTTGTTTTCCCTACAATCAAAATACACCTGGATTGCACAATCCTAAAGCAGTTGACTATAGATTCAGCATGCCACGAAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTAGACAAGGTAGTGAAGGAAGCAATGAGCCAGCCATGGCTACCATTGCCCTTAGGACTCAAACCTCCTTCCATGGATAGTGTGTTGGCTGAACTCTCCAAACAAGGCATACCCAGCATCCCTCTTGGCAACAAGGGTTCTTCTACTCCTAAACCCCGTCGAGATGTACGACCGACCCCGCCACCGGGTCCCACATAG 1713 0.4454 MVCTANDLQGWKDFPKGLRVLLLEGDSSSAAEIREQLEAMDYKVSTFYDENEALSALSSSPKGFHVAIVEVSTSCSLGGFKFLENAKDLPTIMTSKDQCLNTMMKCIALGAVEFLSKPLSEDKLKNIWQHVVHKAFNSGENVLSESLKPVKESVESMLQLQTDIGQDKSRISIDLENVSRFSDNDHEQSAVCDKYPAPSTPQLKQGTRLLDDGDCHEQTNCSTEKESGEHDRECKSVETSCGNLNAESSPQPREPDKTLIREEDDFANVSKGESAVSLNPHNKKFLSNADGNTSPNKTGVLNDSCEIKANRKKVKVDWTPELHKKFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIHKRQSAPREEDRKWHNQGDAMQRNYYMQRPIMAYPPYHSHHTLSPAPIYPMWGQPGSQTAGVQIWGHPGYPMWHPTESWHWKPYPGVHVDAWGCPLVPPPQAPCFPYNQNTPGLHNPKAVDYRFSMPRSSFEHHPAEEVVDKVVKEAMSQPWLPLPLGLKPPSMDSVLAELSKQGIPSIPLGNKGSSTPKPRRDVRPTPPPGPT* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0357 570 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 553 IPR044825 GO:0003700|GO:0045893
Gso11g0357 570 MobiDBLite consensus disorder prediction 184 214 - -
Gso11g0357 570 SMART REC_2 18 128 IPR001789 GO:0000160
Gso11g0357 570 SUPERFAMILY Homeodomain-like 312 369 IPR009057 -
Gso11g0357 570 SUPERFAMILY CheY-like 16 140 IPR011006 -
Gso11g0357 570 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Gso11g0357 570 MobiDBLite consensus disorder prediction 278 301 - -
Gso11g0357 570 MobiDBLite consensus disorder prediction 538 570 - -
Gso11g0357 570 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 313 368 IPR006447 GO:0003677
Gso11g0357 570 Gene3D - 309 370 - -
Gso11g0357 570 Gene3D - 18 145 - -
Gso11g0357 570 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 310 369 IPR017930 -
Gso11g0357 570 Pfam Myb-like DNA-binding domain 316 365 IPR001005 -
Gso11g0357 570 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Gso11g0357 570 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0357 Gso-Chr11 3048026 3054712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0357 1 546 Response Regulator Gene Family AT4G18020 48.700 3.37e-142 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso11g0357 Response_reg 8.7e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0357 - - gmx:100784905 1170.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1720 1 53970993 53977647 Gso11g0357 11 3048026 3054712 GST
Gso11g0357 11 3048026 3054712 Gso5g0609 5 7312526 7319417 PCT
Gso11g0357 11 3048026 3054712 Gso17g1290 17 12764097 12770963 PCT
Gso5g0609 5 7312526 7319417 Gso11g0357 11 3048026 3054712 PCT
Gso17g1290 17 12764097 12770963 Gso11g0357 11 3048026 3054712 PCT