Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0351 ATGCATCACCTAAGTGTCCTTACTCACCATATATCTTCCCCTTTTACACATATGGCGCTTTATCTTTTCTGTCGTCTTTTTGCTATCACCTTAATTTTCATGCAAACTCTGGCGGATACTTCATGCACTGATTGTTTCATTCATTCTCGGGCAGCATATTATCCAAATTCTGAAGAACACGGAACGGATGTAGGTGCATGTGGGTTTGGTTCCTTTGGGGCTACAGTCAATGGTGGAGATGTCTCAGCTGCATCTTCTCTTTATCGAAATGGTGTTGGCTGTGGTGCCTGTTACCAGGTGAGGTGTACCAACAGTGCCTATTGCTCAGAAAATGGTGTAAATGCAGTTATAACCGACCAAGGTTCAAGTGATAACACTGATTTCATTCTTAGCAAACATGCCTTTAGCCGGATGGCTCAAACCACTGATGCAGCTGCTTCTCTATTAGCCCTTGGTGTGGTTGATATTGAATATAGACGTGTTGCATGCAGCTTCCCAGATAAAAACATAACAATCAAGATAGATGAGAGCAGCAACAACCCTTATTACTTGGCTTTTGTCATTTGGTATCAACAAGGAAGGAGAGACATAACTGCTGTGCAGCTCTGTGAGACTCAAAACTTTGTGTGCAAGTTACTGGATAGGAGCCATGGAGCGGTGTGGACTACTACCTCTCCACCAAGAGGACCTTTGTCTTTAAGGATGTTGTTTAGTGATGAAGAAGAGGAAGAAGAAACATGGCTTGTTCCTGTTAATAACATACCCGGAGACTGGAAGGCTGGTGAAACATACGATTCAGGGATACAAGTGAACCAATAG 819 0.431 MHHLSVLTHHISSPFTHMALYLFCRLFAITLIFMQTLADTSCTDCFIHSRAAYYPNSEEHGTDVGACGFGSFGATVNGGDVSAASSLYRNGVGCGACYQVRCTNSAYCSENGVNAVITDQGSSDNTDFILSKHAFSRMAQTTDAAASLLALGVVDIEYRRVACSFPDKNITIKIDESSNNPYYLAFVIWYQQGRRDITAVQLCETQNFVCKLLDRSHGAVWTTTSPPRGPLSLRMLFSDEEEEEETWLVPVNNIPGDWKAGETYDSGIQVNQ* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0351 272 Pfam Lytic transglycolase 84 158 IPR009009 -
Gso11g0351 272 Gene3D - 34 164 IPR036908 -
Gso11g0351 272 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Gso11g0351 272 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Gso11g0351 272 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576
Gso11g0351 272 Pfam Expansin C-terminal domain 170 240 IPR007117 -
Gso11g0351 272 Gene3D - 166 270 IPR036749 -
Gso11g0351 272 SUPERFAMILY PHL pollen allergen 168 266 IPR036749 -
Gso11g0351 272 PANTHER EXPANSIN-LIKE B1 24 271 - -
Gso11g0351 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 168 IPR007112 -
Gso11g0351 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 266 IPR007117 -
Gso11g0351 272 PANTHER EXPANSIN-B3 24 271 - -
Gso11g0351 272 SUPERFAMILY Barwin-like endoglucanases 35 166 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0351 Gso-Chr11 3013850 3015956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0351 16 268 Expansin Gene Family AT4G17030 42.126 3.62e-60 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0351 - - gmx:100783848 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1726 1 54033957 54036830 Gso11g0351 11 3013850 3015956 GST
Gso11g0351 11 3013850 3015956 Gso5g0597 5 7107340 7109654 PCT
Gso11g0351 11 3013850 3015956 Gso17g1282 17 12618455 12620740 PCT
Gso5g0597 5 7107340 7109654 Gso11g0351 11 3013850 3015956 PCT
Gso17g1282 17 12618455 12620740 Gso11g0351 11 3013850 3015956 PCT