Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0346 ATGACAATACTACTAGCTGTTCGTGATTTTCCGGATGGATGTGGAGCATTTCCGAAATTTGTTGAGGATATTAAGAATAAGAATGATCAACATTTAGCAAGAAGGTATCTTCCTCCACGAAAAGCTTCAGCTGTCAGAGACTTCCTTCCTTTATTTGGAGCATGCAATGACATGGATGTGTGTCAAGAAGAGGGGAAGAAAGTGGGTCTACAAAACCTCGCTGTAGATGACAACAATCAATTGAAAAAAGTATCAGCAGCTGATGATGTAAAAGAAGAAGTTAAGAGTAACATTCAAGATGACTATAGTCGCAAGAGAAATATTGTGGACTTCTATCAAAATCAAACTGATTCTGAAAGGAATGTTACTGAGGGACTGAAGGAGCTGCGTGCATTTGAAGAACCATCTTCTCAGATGAAAATGGCGCCGGAAAAAAAATTGCAGGTCTCATCATCAGACATGAAAGTGGTACTTGGTTTCATGGTTAAATCAGAATGTCCTTGGAGGTCTGGTCAAGTTTCCTCCCACTTTAAGTTGGGAGATGCTAAAAATGAAGACAAGAGAAAGAAAGTGGTTTCTTTTGCATTGCCTGACAGGTCTAGAAGAGCTATCAAGACTAAATGTAATTTTGGGCAGAAGCCTTTCAAAAAGAAGGCAAATTCTGCTTCTGAAGGTATGGGTGAATTAGAAATTTGGGGAAAGGAGGGCTGGCTTGACCCTGTTGAAAATAGTGAAGAATCACATGAGTTCGATGTAAATGTTACTCCCTCTTCTCATTCTAATTTCACTGGTGGTGATGAGAGTGACTCGGATGTGACCCGAGAAAAAGTGAGGGAAGCATTACGGTTGTTTCAAGTTGTTTGTAGAAGTCTTTTAGAGGAAGGAGAATCAAAGTCAAATGAACTAGGGAAAAGAAAGAGGGTTGATTTAATTGCTGCAAGGATTCTTAAGGACAATGGGATTCATGTTAACTCAGGCAAGAAGATACTGGGCCCTGTACCTGGGGTTGAAGTTGGTGATGAGTTTCAATATCGGGTGGAGCTTAATATAATTGGCCTTCATCTTCAGATTCAGGGTGGCATAGATTATGTGAAGCACAATGGTAAGATCCTTGCGACTAGTATTGTTGCTTCAGGTGGCTATGCTGATTATTTGGTCAATTCGGATGTCTTGGTATATTCAGGGCAGGGTGGGAATGTGATGAGCAATGACAAAAAACCTGAAGATCAGAAGCTCAAGCGGGGCAATCTTGCTTTGAAGAACAGTAGTGAGGAAAAGAATCCTGTTAGGGTGATTCGCGGCTCTGAATCAATGGATGATAAATACAAGACATATGTATATGATGGGCTGTATGTGGTCGAGTCATATTGGCAGGACAGAGGATCACATGGGAAGCTGGTTTATAGGTTTCGCCTTAAAAGAATTCCTGGTCAAAAGCTTGCTTTGAAGGAAGTGAAGAAATCTAAATAG 1470 0.4061 MTILLAVRDFPDGCGAFPKFVEDIKNKNDQHLARRYLPPRKASAVRDFLPLFGACNDMDVCQEEGKKVGLQNLAVDDNNQLKKVSAADDVKEEVKSNIQDDYSRKRNIVDFYQNQTDSERNVTEGLKELRAFEEPSSQMKMAPEKKLQVSSSDMKVVLGFMVKSECPWRSGQVSSHFKLGDAKNEDKRKKVVSFALPDRSRRAIKTKCNFGQKPFKKKANSASEGMGELEIWGKEGWLDPVENSEESHEFDVNVTPSSHSNFTGGDESDSDVTREKVREALRLFQVVCRSLLEEGESKSNELGKRKRVDLIAARILKDNGIHVNSGKKILGPVPGVEVGDEFQYRVELNIIGLHLQIQGGIDYVKHNGKILATSIVASGGYADYLVNSDVLVYSGQGGNVMSNDKKPEDQKLKRGNLALKNSSEEKNPVRVIRGSESMDDKYKTYVYDGLYVVESYWQDRGSHGKLVYRFRLKRIPGQKLALKEVKKSK* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0346 489 ProSiteProfiles YDG domain profile. 331 474 IPR003105 -
Gso11g0346 489 SMART G9a_1 326 478 IPR003105 -
Gso11g0346 489 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 90 489 - -
Gso11g0346 489 Pfam SAD/SRA domain 330 478 IPR003105 -
Gso11g0346 489 MobiDBLite consensus disorder prediction 252 271 - -
Gso11g0346 489 SUPERFAMILY PUA domain-like 313 479 IPR015947 -
Gso11g0346 489 MobiDBLite consensus disorder prediction 252 267 - -
Gso11g0346 489 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 90 489 - -
Gso11g0346 489 Gene3D - 314 489 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0346 Gso-Chr11 2976048 2978485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0346 274 482 Su(var)3-9 homologs AT5G04940 41.315 2.19e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0346 K11420 - gmx:100792689 975.696