Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0338 ATGAATTGTTTCTTCTTGAAAAACAAATCAAAATCCGACGCAGAATTACCAAAGCGAAGGAAGAAGAAAAATCAGGTGGGGAATAATGGAGCAAGCAAGTCCTCCACCAGCTCGCCGCTACCATCGCCAAGGAGCATAAAAGAATTGTACAAAGAGAACGAACACAATTTCAGAATCTTCACTTTGCAAGAGCTGGTAGATGCAACACATGGCTTCAATAGGATGCTCAAGATTGGAGAAGGGGGATTCGGGAAAGTGTATAGGGGAACAATTAAACCTCACCCTGAAGATGGAGCTGATCCTATTGTCGTCGCAATTAAAAAACTTAACACGCGTGGCTTACAGGGGCATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGCGTTGTTAACCACCCGAATTTGGTTAAGCTTCTGGGATACTGCTCCGTAGATAGTGAAAAAGGAATCCAACGGTTGTTGGTGTATGAGTTCATGTCTAACAGGAGTTTGGAAGATCATCTTTTCAGTCTTTCTTTACCTCATTTGCCTTGGAAAACAAGATTGCAAATCATGCTCGGTGCTGCTCAAGGATTACATTATCTACATAACGGATTGGAGGTTAAGGTGATCTACAGAGATTTCAAATCTTCAAATGTGTTATTGGACAAGAAATTCCATCCCAAGCTTTCAGATTTCGGTCTTGCTAGGGAGGGCCCAACGGGTGATCAGACCCATGTATCTACTGCGGTAGTAGGGACACAAGGATATGCTGCTCCAGAGTATGTCGAAACAGGTCATCTCAAAATTCAGAGTGACATATGGAGTTTCGGTGTGGTACTTTATGAGATTCTCACAGGAAGGCGTGCTTTGAATAGAAACCGTCCAATAGGGGAAAAAAAGCTTATAGAGTGGGTTAAAAACTACCCTGCTAACAGTAGCAGATTCAGCACCATCATTGACCCTCGTCTCAAGAACCAATATTCTCTTGGTGCAGCTCGGAAAGTAGCCAAGTTGGCAGATAGCTGCTTGAAGAAGAATCCTGAAGATAGACCATCCATGAGTCAGATAGTGGAAAGCTTGAAGCAAGCATTGCAGGATTCAGAAACCAAAAACGCTTAG 1101 0.4287 MNCFFLKNKSKSDAELPKRRKKKNQVGNNGASKSSTSSPLPSPRSIKELYKENEHNFRIFTLQELVDATHGFNRMLKIGEGGFGKVYRGTIKPHPEDGADPIVVAIKKLNTRGLQGHKEWLAEVQFLSVVNHPNLVKLLGYCSVDSEKGIQRLLVYEFMSNRSLEDHLFSLSLPHLPWKTRLQIMLGAAQGLHYLHNGLEVKVIYRDFKSSNVLLDKKFHPKLSDFGLAREGPTGDQTHVSTAVVGTQGYAAPEYVETGHLKIQSDIWSFGVVLYEILTGRRALNRNRPIGEKKLIEWVKNYPANSSRFSTIIDPRLKNQYSLGAARKVAKLADSCLKKNPEDRPSMSQIVESLKQALQDSETKNA* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0338 366 MobiDBLite consensus disorder prediction 339 366 - -
Gso11g0338 366 Gene3D Transferase(Phosphotransferase) domain 1 159 366 - -
Gso11g0338 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Gso11g0338 366 SUPERFAMILY Protein kinase-like (PK-like) 54 354 IPR011009 -
Gso11g0338 366 Pfam Protein tyrosine and serine/threonine kinase 77 354 IPR001245 GO:0004672|GO:0006468
Gso11g0338 366 MobiDBLite consensus disorder prediction 27 43 - -
Gso11g0338 366 CDD STKc_IRAK 78 356 - -
Gso11g0338 366 PANTHER OS01G0588500 PROTEIN-RELATED 7 365 - -
Gso11g0338 366 PANTHER RECEPTOR-LIKE KINASE PLANT 7 365 - -
Gso11g0338 366 MobiDBLite consensus disorder prediction 346 366 - -
Gso11g0338 366 Gene3D Phosphorylase Kinase; domain 1 52 158 - -
Gso11g0338 366 ProSiteProfiles Protein kinase domain profile. 72 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0338 366 ProSitePatterns Protein kinases ATP-binding region signature. 78 108 IPR017441 GO:0005524
Gso11g0338 366 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0338 Gso-Chr11 2831207 2833991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0338 1 354 Glycoside Hydrolase AT3G07070 41.209 1.19e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso11g0338 PK_Tyr_Ser-Thr 5.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0338 - K00924 gmx:100782248 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1736 1 54188650 54191424 Gso11g0338 11 2831207 2833991 GST
Gso11g0338 11 2831207 2833991 Gso5g0582 5 6817525 6820741 PCT
Gso11g0338 11 2831207 2833991 Gso17g1265 17 12409971 12413088 PCT
Gso5g0582 5 6817525 6820741 Gso11g0338 11 2831207 2833991 PCT
Gso17g1265 17 12409971 12413088 Gso11g0338 11 2831207 2833991 PCT