Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0333 ATGCAACAATCACATATAAATGCCACTCCTTATCTTTGGTGTGAACAAGGATGTCCAAATCTTCAGTTAGCTTCTTTTGAATTTTGGTCTGTGATTTGTTGCTTTGGTGAGAGAGTGGATATGGACGAACGGTACGAGACTTTGAAGGAGCTTGGTTCAGGGAACTTCGGAGTGGCAAGGTTGGCCAAAGACAAGGAGACAGGAGAACTTGTTGCCATCAAATACATAGAAAGGGGAAAAAAGATTGATGCGAATGTTCAAAGGGAGATAGTTAACCACCGATCTTTAAGGCATCCAAATATTATCAGGTTCAAAGAGGTATTTCTGACCCCTACTCATTTAGCTATTGTCCTTGAGTATGCTGCTGGTGGCGAACTCTTCGAGAGGATATGCAATGCTGGTCGATTGAGTGAAGATGAGGCAAGATTTTTCTTTCAGCAACTAATATCTGGAGTTAGCTATTGTCATTCCATGCAAATATGTCATAGAGATCTGAAATTGGAAAACACTCTACTGGACGGAAATCCAGCTCCTAGACTTAAAATTTGTGACTTTGGTTTCTCCAAGTCTGCTTTGCTGCACTCTCAACCTAAATCAACTGTTGGAACTCCTGCATACATTGCTCCAGAAGTTTTGTCGCGAAAGGAATATGATGGAAAGGTTGCCGATGTTTGGTCGTGTGGTGTGACACTTTATGTCATGTTAGTTGGAGCATACCCATTTGAAGATCCAGAAGATCCTAAAAATTTCAGAAAGAGTATTGGGAGAATTATGAGTGTTCAATATGCCATACCCGACTACGTACGTGTCTCTAAGGAGTGTAGGCATCTTATATCTCGTATTTTTGTTGCCAATCCTGCCAAGAGGATCAACATCTCGGAGATAAAACAGCACCTTTGGTTTAGGAAGAACTTGCCAAGAGAGATAATTGAGGCTGAAAGAAGGGGTTACGAGGAAACACAAAAGGACCAACCAAGCCAAAGTGTGGAAGAAATCATGCAGATCATTCAAGAAGCAAGGACAAAAATCCACACTGGTGAGCAAGCTGGCACAGGAACTTCGGATGTTGTGCGTGGTGATGAGGCTAATGAGGAAGTTGATATTAATGACCACTTTGCCAAATACCTAACCCTTGATTAA 1140 0.4167 MQQSHINATPYLWCEQGCPNLQLASFEFWSVICCFGERVDMDERYETLKELGSGNFGVARLAKDKETGELVAIKYIERGKKIDANVQREIVNHRSLRHPNIIRFKEVFLTPTHLAIVLEYAAGGELFERICNAGRLSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGNPAPRLKICDFGFSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKSIGRIMSVQYAIPDYVRVSKECRHLISRIFVANPAKRINISEIKQHLWFRKNLPREIIEAERRGYEETQKDQPSQSVEEIMQIIQEARTKIHTGEQAGTGTSDVVRGDEANEEVDINDHFAKYLTLD* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0333 379 Gene3D Phosphorylase Kinase; domain 1 35 120 - -
Gso11g0333 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Gso11g0333 379 Gene3D Transferase(Phosphotransferase) domain 1 121 309 - -
Gso11g0333 379 SUPERFAMILY Protein kinase-like (PK-like) 27 311 IPR011009 -
Gso11g0333 379 Pfam Protein kinase domain 45 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0333 379 ProSitePatterns Protein kinases ATP-binding region signature. 51 74 IPR017441 GO:0005524
Gso11g0333 379 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 43 372 - -
Gso11g0333 379 ProSiteProfiles Protein kinase domain profile. 45 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0333 379 SMART serkin_6 45 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0333 379 CDD STKc_SnRK2 44 300 - -
Gso11g0333 379 PANTHER SERINE/THREONINE KINASE 43 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0333 Gso-Chr11 2800060 2803975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0333 44 313 CBL-interacting serine-threonine protein kinases AT4G24400 44.484 7.95e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Gso11g0333 Pkinase 1.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0333 K14498 - gmx:547797 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1740 1 54229523 54233368 Gso11g0333 11 2800060 2803975 GST
Gso11g0333 11 2800060 2803975 Gso5g0569 5 6651202 6655282 PCT
Gso11g0333 11 2800060 2803975 Gso17g1254 17 12302205 12306173 PCT
Gso5g0569 5 6651202 6655282 Gso11g0333 11 2800060 2803975 PCT
Gso17g1254 17 12302205 12306173 Gso11g0333 11 2800060 2803975 PCT