Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0328 ATGGCAACACCAGTCAGTAATAGTCATTTTGAAGAAGGAAGAAATAAGAAGTCATTGATGGAAAACGAGGAATACGCTTTTCTCGCTAGGCCCATGTATAAGTGGCGGAAAGTTTCTGCTGTTCGTGATTTCCCCGAAGGATGTGGACCATTTGCTTCGAGGATTGATCCAGTGTTAAACGTAAATATTGCAGGTTATGGTTCAGCTAATGGTACAATTATTGAGGATAAGAATGGTGAACATTTAGTGGGTGATACTGTTAAAACTTCCAATTGTGAAAATGATGGCCAGCATTCTGAAGTAAAAGATTCGCTTCTTACTGAAACTCTTGGTCAAACAACTGACAGTGGTTTAAATAAGGAAAACCCCATAGTCTCATCTCCTCAAGTGAATGGGTCTACTGCAGAACATGAACCTGCAAAAGTGACTATTGGTGAAACAATTGACTCTGGTTTGAATAAGGAAAACCCTGCTGTTTCATGTCATAAAATGGATGAACTTACTGCAGAAGATGAAGCTGCAAAAGTGACTATTGACCAAACAACTGACTGTGTTTTCAACAAGGAAAACCCTGTGGTCTCATCTCATAAAGTGGATGGGCCTACTGCAGAAGACAAGCCTGTCAAAGTGCCATTAGCGGACATGGAAATTTTGAATACAGAGTTTGCAAGAACTGCAAACACTGTAAAATGTGACTCTTATATGTTGAAGTCATCTTCTCAAGTGGGTGAAGTGGTTATGTCAGGTGGTTCAAAACCCTTATTGTCAAATGTCAATATATCTGCTGGTTCTAGTGCTTGCATGGTGGAGCCTGTAACTAGAAGGTATCTTCCTCGAAGAAAAGTTTCAGCTCTCAGAGACTTCCCAACTTTATGTGGACGCAATGCTCTACATCTCAGTAAGGACAAGGATGTGTGTCTAGAGGGGATCTCTTCTTTAAATAACAAGAAACTGTGTCTACAGAACCTGGCCGTAGATGAAAACAATCCATTGAAAGAAGTACGAGCCATGGCTGTAGATGACAGTCCATTGAAAGAAGTAGGAACCGTGGCTGTAGATGACAGTCCATTGAAAGAAGTAGGAACCGTGGCTGTAGATGACAGTCCATTGAAAGTAGGAGCCGCTGATGTAAAAGAAATTAAAAGTAACATCCAGGATGAGTATGGTTGCAAGAGAAAGCTTGTGGACATCCTTAAAACTGATTCTGAAAGTAATGCTGCAAAGAGAGTGAAGAAACCACTGGAGATCAAGAGAGACAAGCATGTTACACTTCCCGAAGAAAGTAATCATCGTGTTAAAATAAATTCCAAGGCAGTGGTAAAAGAGCAAAATAGGGAAGAGACAAGGCCTTTGGTTCTATCACATTCTAAGCATAAGTTGAAAGGGAATTTTAATGGATCACGGGTCTCATCAGACAGGAAAGTAGTACTAGGTTTGATGGCCGAATCAGAATGTCCTTGGAGGTCCGGCAAAGGTTCCTCCAAATTTAAGTTCAGTGATGCTAAAAATGAAGGCAAGAAAAAGAAAGTAGCTTCTGCATTGCCAGATAGGTCTAAAACAGCTATCAAGAGTAAAGGTGCACTAAGTTATTCTGGGCAGAAGCCTTTGAAAAAGAAAAAAGGAAATGCTTTTTCTGAAGGTATGAGTGAATTAGTAATTTGGGAAAAGAAGGATAGTCTTGACCCTAATGAAAATAATGAAGACCTTCAAATTGTTCTGAAATCACATGAGTTCAATGTAAATGTTACTCCTTCTCATTCTAATTTCACTGGTGATGAGGGTGACTCAAATGTGACCCGGAAAAAAGTGATAAAAATATTACGGTTGTTTCAAGTTGTTTTTAGAAAGCTTTTACAGGAAGTAGAATCAAAGTTAAGTGAGCGAGCAAATGGTAAAAGAGTTGATTTAATTGCTTTAAAGATCCTTAAGGAGAATGGGCATTATGTTAACTCGGGCAAGCAGATACTGGGCGCTGTCCCTGGGGTTGAAGTTGGTGATGAATTTCAATATAGGGTGGAGCTTAATATAGTTGGCCTTCATCGTCAGATTCAGGGTGGCATCGATTATGTGAAGCACAATGGTAAGATCCTTGCAACTAGTATTGTTGCGTCAGGGGCTTATGCTGATGATTTGGATAATCCAGATGTCTTGATATATACAGGGCAGGGTGGGAATGTGATGAACCCTGATAAAGAACCTGAAGATCAGAAGCTCGAGCGGGGCAATCTTGCTCTGAAGAACAGTAGTGAGGAAAAAAATTCTGTTAGGGTGATACGTGGTTCTGAATCAATGGATGGAAAGTGCAGGATATATGTTTATGATGGATTGTATGTGGTTGAATCTTATCAGCCTGATGTGGGACCACATGGGAAGCTGGTTTTTAAGTTTTTCCTGCGAAGAATTCCTGGTCAACCAGAGCTTGCTTTGAGGGAAGTGAAGAAATCTAAAAAGTTCAAAACAAGAGAAGGTGTATGTGTTGATGATATTTCTTATGGAAAAGAACGAATTCCGATATGTGCTGTGAACACCATAGATGATGAAAAGCCCCCTCCGTTTAATTACATAACTAGCATTATATACCCCAATTGCCATGTCCTTCCTGCAGAAGGATGTGATTGTACTAATGGATGCTCAGATTTGGAGAAATGTTCGTGTGTAGTGAAAAATGGGGGAGAGATTCCATTCAATCACAATGGGGCTATTGTACAAGCAAAACCTCTGGTCTATGAGTGTGGACCTACTTGTAAATGTCCTTCAACATGTCATAATAGAGTCAGCCAACTTGGCATAAAGTTCCAACTTGAAATATTTAAAACCGATACAAGGGGATGGGGTGTGAGATCCCTGAATTCAATCCCTTCAGGAAGTTTTATCTGTGAATATATAGGGGAGCTTCTTGAGGACAAGGAAGCTGAACAAAGAACCGGTAATGATGAGTATCTTTTTGATATTGGAAATAACTATAGCAACAGTGCTCTTTGGGATGATCTTTCGACTCTCATGCCTGATGTACACACAACTTCTTGTGAAGTTGTGAAGGATGGTGGTTTCACCATTGACGCTGCTCAGTTTGGTAATGTGGGGAGATTCATCAACCATAGTTGCTCCCCTAATCTTATTGCTCAGAATGTCCTTTATGATAACCATGACACCAGGATGCCTCACATAATGTTCTTTGCTGCTGATAACATTCCTCCCCTGCAAGAGCTGACTTATGATTACAATTATGAAATAGATCAAATTCGTGATTCTGGTGGCAATATAAAAAAGAAGTATTGCCATTGTGGTTCTGTGGAATGTACTGGCAGGATGTATTGA 3318 0.4005 MATPVSNSHFEEGRNKKSLMENEEYAFLARPMYKWRKVSAVRDFPEGCGPFASRIDPVLNVNIAGYGSANGTIIEDKNGEHLVGDTVKTSNCENDGQHSEVKDSLLTETLGQTTDSGLNKENPIVSSPQVNGSTAEHEPAKVTIGETIDSGLNKENPAVSCHKMDELTAEDEAAKVTIDQTTDCVFNKENPVVSSHKVDGPTAEDKPVKVPLADMEILNTEFARTANTVKCDSYMLKSSSQVGEVVMSGGSKPLLSNVNISAGSSACMVEPVTRRYLPRRKVSALRDFPTLCGRNALHLSKDKDVCLEGISSLNNKKLCLQNLAVDENNPLKEVRAMAVDDSPLKEVGTVAVDDSPLKEVGTVAVDDSPLKVGAADVKEIKSNIQDEYGCKRKLVDILKTDSESNAAKRVKKPLEIKRDKHVTLPEESNHRVKINSKAVVKEQNREETRPLVLSHSKHKLKGNFNGSRVSSDRKVVLGLMAESECPWRSGKGSSKFKFSDAKNEGKKKKVASALPDRSKTAIKSKGALSYSGQKPLKKKKGNAFSEGMSELVIWEKKDSLDPNENNEDLQIVLKSHEFNVNVTPSHSNFTGDEGDSNVTRKKVIKILRLFQVVFRKLLQEVESKLSERANGKRVDLIALKILKENGHYVNSGKQILGAVPGVEVGDEFQYRVELNIVGLHRQIQGGIDYVKHNGKILATSIVASGAYADDLDNPDVLIYTGQGGNVMNPDKEPEDQKLERGNLALKNSSEEKNSVRVIRGSESMDGKCRIYVYDGLYVVESYQPDVGPHGKLVFKFFLRRIPGQPELALREVKKSKKFKTREGVCVDDISYGKERIPICAVNTIDDEKPPPFNYITSIIYPNCHVLPAEGCDCTNGCSDLEKCSCVVKNGGEIPFNHNGAIVQAKPLVYECGPTCKCPSTCHNRVSQLGIKFQLEIFKTDTRGWGVRSLNSIPSGSFICEYIGELLEDKEAEQRTGNDEYLFDIGNNYSNSALWDDLSTLMPDVHTTSCEVVKDGGFTIDAAQFGNVGRFINHSCSPNLIAQNVLYDNHDTRMPHIMFFAADNIPPLQELTYDYNYEIDQIRDSGGNIKKKYCHCGSVECTGRMY* 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0328 1105 SMART preset_2 826 916 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso11g0328 1105 MobiDBLite consensus disorder prediction 495 514 - -
Gso11g0328 1105 ProSiteProfiles Post-SET domain profile. 1089 1105 IPR003616 -
Gso11g0328 1105 Gene3D - 640 820 IPR036987 -
Gso11g0328 1105 ProSiteProfiles YDG domain profile. 657 800 IPR003105 -
Gso11g0328 1105 Gene3D SET domain 821 1105 IPR046341 -
Gso11g0328 1105 Pfam SET domain 943 1075 IPR001214 GO:0005515
Gso11g0328 1105 Pfam Pre-SET motif 829 924 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso11g0328 1105 Pfam SAD/SRA domain 656 804 IPR003105 -
Gso11g0328 1105 MobiDBLite consensus disorder prediction 492 518 - -
Gso11g0328 1105 ProSiteProfiles Pre-SET domain profile. 869 929 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso11g0328 1105 MobiDBLite consensus disorder prediction 113 139 - -
Gso11g0328 1105 SMART set_7 932 1081 IPR001214 GO:0005515
Gso11g0328 1105 SMART G9a_1 652 804 IPR003105 -
Gso11g0328 1105 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 527 1104 - -
Gso11g0328 1105 SUPERFAMILY PUA domain-like 641 813 IPR015947 -
Gso11g0328 1105 SUPERFAMILY SET domain 816 1081 IPR046341 -
Gso11g0328 1105 CDD SET_AtSUVH-like 850 1076 - -
Gso11g0328 1105 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 87 1105 IPR025794 GO:0016571
Gso11g0328 1105 MobiDBLite consensus disorder prediction 113 136 - -
Gso11g0328 1105 ProSiteProfiles SET domain profile. 932 1075 IPR001214 GO:0005515
Gso11g0328 1105 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 527 1104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0328 Gso-Chr11 2757925 2762812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0328 597 1102 Su(var)3-9 homologs AT5G04940 42.095 2.90e-120 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso11g0328 SAD_SRA 4.1e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0328 K11420 - gmx:100776895 2201.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1746 1 54275186 54281059 Gso11g0328 11 2757925 2762812 GST