Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0327 ATGGGCAAGCAAGGACCTTGCTATCACTGTGGAGTTACAAGCACGCCACTCTGGCGCAATGGACCACCCGAGAAGCCAGTACTATGCAATGCATGTGGGTCTCGATGGAGAACAAAGGGAACTCTTGCAAATTATACCCCTTTACATGCTCGAGCAGAAACTGATGATTATGATGATCAAAGGGTTTCCAGGGTAAAGAGCATATCGATAAATAAGAAGAAAGAAGTGGCATTGCTCAAACGAAAACAGAACCATGATAATGTAATGTCTGGAGGGTTTGCACCTGATTACAACCAGGGATACCAAAAGGTTGTAGATGAAGATATTAGCAACCGGTCGAGTTCAGGATCAGCTATCTCTAACTCAGAGAGCTGTGCACAATTTGGTTATGGTGGCATGGATGCTAGTGATCTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGTGTTGGTCGTTCAAAGCCTTCTTCTGTTGAGAAGCTAACAAAAGATTTATGTACTATTCTTCATGAACAACAGTCATATTTTTCGGCATCTTCTGAAGAAGATCTTCTTTTTGAAAGTGATACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCGTTCTCATTAGGCATCCTAGCTATATAGCTCGTGAAGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCCAATGAGTGAGGCATATTCTTGTTCTGGTGGCATTCTAATGCATAATGATTCCAGTCGCTTGAAGTCTTCATCTCTGGAAGTTGAAAAGATCGGGAACTCTACTGGTCAAGGAGTGCTGCAGGAACAACTTAAAAGTGACAAGTCTCAACATGAAAGAGTACAAATTCTTGGCAATCATGAATCCCCATTGTGCTCAATAGATTTAAATGATGTTGTAAACTATGAAGAGTTTTTGAGAATCTTGACAAATGAAGAGCAACAGCAATTACTGAAGTTACTTCCTGTGGTTGATACTGCTAAACTCCCTGATAGCCTTAAAGTCATGTTCAATAGCTCTCAATTCAAGGAGAACTTAACTTACTTTCAGCAGCTTCTTTCAGAAGGAGTCTTTGATATCTCTTTGTTGGGGGCAAAACCTGAAGACTGCAAGACTTTGAAAATACTTGCATTATCCAATCTGTCAAAGTCAAAATGGGTAGAACACCATAATTTTCTCAAGAAATATAAAAACAAAGCTGTAAAATCTAATACTATGGGATCTACTGGTACAGCATCAATTAATGTTTTGAACAACAGGGCATCAACTAATGTTGCAAATATCAAGAGAATGTGTGATAGCAGAAATCAAAACTTTCCAGAATTGAAGACAATAATGAGGAGCCCCAAAAGAATGATCACAAAGGCTAGTTTTGAGTGCAAAGAAGCAGTAGAAGATGGTGCTTGCTATAGTCCAAAACACCTATTTGCTTTGCCTCCTGATGCTAGTTCTCTCTTGCTGGATTCTTTCAACTTTGTTGAGGAGAGTGGTGATCAGGATCTGCTGCTAGAGGTGCCATCTAACACTTCTTTTCCACAGGCAGAGCTCTTGCACCCAACTTTAAGCCTTGGTGCTCAAGCCAGCACTGGTAGCAGCTCAGTCTACTCAAATCTTGTTCACCATTAA 1656 0.4088 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDDYDDQRVSRVKSISINKKKEVALLKRKQNHDNVMSGGFAPDYNQGYQKVVDEDISNRSSSGSAISNSESCAQFGYGGMDASDLTGPAQSVVWDAMVPSKKRTCVGRSKPSSVEKLTKDLCTILHEQQSYFSASSEEDLLFESDTPMVSVEIGHGSVLIRHPSYIAREEESEASSLSVDNKQCPMSEAYSCSGGILMHNDSSRLKSSSLEVEKIGNSTGQGVLQEQLKSDKSQHERVQILGNHESPLCSIDLNDVVNYEEFLRILTNEEQQQLLKLLPVVDTAKLPDSLKVMFNSSQFKENLTYFQQLLSEGVFDISLLGAKPEDCKTLKILALSNLSKSKWVEHHNFLKKYKNKAVKSNTMGSTGTASINVLNNRASTNVANIKRMCDSRNQNFPELKTIMRSPKRMITKASFECKEAVEDGACYSPKHLFALPPDASSLLLDSFNFVEESGDQDLLLEVPSNTSFPQAELLHPTLSLGAQASTGSSSVYSNLVHH* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0327 551 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Gso11g0327 551 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Gso11g0327 551 Pfam Asx homology domain 283 369 IPR028020 -
Gso11g0327 551 Gene3D - 292 391 IPR038108 -
Gso11g0327 551 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Gso11g0327 551 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Gso11g0327 551 PANTHER GATA TRANSCRIPTION FACTOR 26 1 551 - -
Gso11g0327 551 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 409 IPR044867 -
Gso11g0327 551 PANTHER OSJNBB0038F03.10 PROTEIN 1 551 IPR044589 -
Gso11g0327 551 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Gso11g0327 551 Gene3D - 3 86 IPR013088 GO:0006355|GO:0008270
Gso11g0327 551 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0327 Gso-Chr11 2749664 2755476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0327 1 528 C2C2-Gata Transcription Factor Family AT4G17570 53.184 8.04e-159 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso11g0327 ASXH 8.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0327 - - gmx:100798504 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1747 1 54283213 54289126 Gso11g0327 11 2749664 2755476 GST
Gso11g0327 11 2749664 2755476 Gso5g0551 5 6346030 6351808 PCT
Gso11g0327 11 2749664 2755476 Gso17g1235 17 12072623 12078486 PCT
Gso5g0551 5 6346030 6351808 Gso11g0327 11 2749664 2755476 PCT
Gso17g1235 17 12072623 12078486 Gso11g0327 11 2749664 2755476 PCT