Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0316 ATGTACCATAGCTTTTATAAATATCCCCATCCATTTTCCCTTCCAAGTTCCAATATTCAATTCAACACCTTCCCTCATTCTCTTCAAATGTACGGACAAAGTTGCTACGAGTCCGATTTGGCCCTTTTGGACTCCATTCGCCGCCACTTACTCGGCGACTCCGAGGAACACAGATTCGGAGCCCCGAATGTTAATTCGGGTAGCACTCCATTGTACTCTCGGAGCTCCAGTTTCGGCAGGTTGTACCCTTGCCTGAGTAACGATTGGGGCGAACTTCCTCTTATGGAAGACGATTCAGAAGACATGCTTCTTTATGGTGTTCTTCGCGACGCCGTGAACGTAGGCTGGGTCCCATCTCTCGACGCTTCCTCACCGGAGAGTTTCTCGTCGGCTTTCATGCCGCCGGTGACCGTGAAATCCGAAACGGATCTATTTCCGGCACCGGAACCGATTTGTAACCCTCCGGGGGTTCAGGGCCCGGCGCCGGCGGTAGTTCCGGCGAAAGGGAAGCACTACCGGGGCGTGCGGCAGCGACCGTGGGGAAAATTCGCAGCGGAGATCCGCGACCCGGCTAAAAATGGGGCTCGGGTTTGGCTTGGGACTTTTGAGACGGCTGAGGACGCCGCGCTGGCTTACGATCGAGCCGCGTATCGAATGCGCGGCTCGCGGGCTTTGTTGAATTTTCCGCTCCGGATTAATTCGGGCGAGCCCGAACCGGTTCGAGTTACGGCGAAGCGGGCTTCAGCAGAACCGTGTTCTTCGTCGGAGAGTGGATCTTGGGTGAAGAAGCGGAAGAAGGTGGTGGGTTGA 810 0.5556 MYHSFYKYPHPFSLPSSNIQFNTFPHSLQMYGQSCYESDLALLDSIRRHLLGDSEEHRFGAPNVNSGSTPLYSRSSSFGRLYPCLSNDWGELPLMEDDSEDMLLYGVLRDAVNVGWVPSLDASSPESFSSAFMPPVTVKSETDLFPAPEPICNPPGVQGPAPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRINSGEPEPVRVTAKRASAEPCSSSESGSWVKKRKKVVG* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0316 269 CDD AP2 170 229 IPR001471 GO:0003700|GO:0006355
Gso11g0316 269 Gene3D AP2/ERF domain 170 232 IPR036955 GO:0003700|GO:0006355
Gso11g0316 269 Pfam AP2 domain 171 221 IPR001471 GO:0003700|GO:0006355
Gso11g0316 269 ProSiteProfiles AP2/ERF domain profile. 171 229 IPR001471 GO:0003700|GO:0006355
Gso11g0316 269 SMART rav1_2 171 235 IPR001471 GO:0003700|GO:0006355
Gso11g0316 269 MobiDBLite consensus disorder prediction 235 269 - -
Gso11g0316 269 SUPERFAMILY DNA-binding domain 171 231 IPR016177 GO:0003677
Gso11g0316 269 PRINTS Ethylene responsive element binding protein signature 172 183 IPR001471 GO:0003700|GO:0006355
Gso11g0316 269 PRINTS Ethylene responsive element binding protein signature 195 211 IPR001471 GO:0003700|GO:0006355
Gso11g0316 269 PANTHER DNA-BINDING DOMAIN 51 258 IPR044808 GO:0003700|GO:0009873
Gso11g0316 269 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2-LIKE 51 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0316 Gso-Chr11 2658164 2659436 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0316 37 242 AP2-EREBP Transcription Factor Family AT4G17500 56.828 1.29e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso11g0316 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0316 K09286 - gmx:100819649 524.242