Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0315 ATGGCAAACGCTCTTGAAGTCTCTGCTCTCAATCGCATCAAGCTGCATCTTTTAGGAGAACTCTCTCCCCTCACCCAATTTCAGGAACCAAACACAACCTCCCTCTGTTCCCAATCTTCAACTTCCGATTCATTCACCACAGTTGACCAAATCTTCTCCGAATTCCTCGATTTCCCAACTACTACTACTTCTTCCACAGAACAAAACCAGTTTTCTGCATTCGAGTTTGAGCCAAAACCCGAAATAATTGAGCCACAATTGGAATTCAGTTTTCCAACCACACGCTGCAAATCGAGTCGAAGGCCGTCGCTGCAAATCTCTCTCCCGAAGAAGACCGAGTGGATCCAATTTGGAGAGCCCGAGGTTACCGAAACGGTGTCGCAGAGTAACCCGAACGCGGAAGAGAAGAAGCACTACAGAGGAGTGCGACAGAGACCGTGGGGGAAGTTTGCAGCGGAGATCCGGGACCCGAACAAGCGCGGCTCCAGGGTGTGGCTTGGGACGTTCGACACGGCTATCGAAGCCGCCAAAGCCTACGACCGAGCCGCGTTCAGGCTTCGCGGCTCCAAAGCCATCCTCAACTTCCCCCTCGAAGCCGGCGCCGATGACCGCAAACGCCAAAGGGAAGAGAAGGTGGAGCCGGTGCTTGAAGTCGTCAAGAGAGAAAAGATAGGGGAATCCGACGTTAGTCTTATTAAGAATAATCCTTTAACGCCGTCTAGTTGGTTAGGGTTCTGGGGTAGTGATGCAAACGGAATATTCACCGTGCCGCCCTTGTCACCGTTATCTCCCCACCCGGCGTTGGGTTTTCCACAGCTTATGGTTGTGTGA 831 0.5211 MANALEVSALNRIKLHLLGELSPLTQFQEPNTTSLCSQSSTSDSFTTVDQIFSEFLDFPTTTTSSTEQNQFSAFEFEPKPEIIEPQLEFSFPTTRCKSSRRPSLQISLPKKTEWIQFGEPEVTETVSQSNPNAEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFRLRGSKAILNFPLEAGADDRKRQREEKVEPVLEVVKREKIGESDVSLIKNNPLTPSSWLGFWGSDANGIFTVPPLSPLSPHPALGFPQLMVV* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0315 276 Gene3D AP2/ERF domain 137 198 IPR036955 GO:0003700|GO:0006355
Gso11g0315 276 SUPERFAMILY DNA-binding domain 138 197 IPR016177 GO:0003677
Gso11g0315 276 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 4 261 - -
Gso11g0315 276 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 261 - -
Gso11g0315 276 SMART rav1_2 138 202 IPR001471 GO:0003700|GO:0006355
Gso11g0315 276 ProSiteProfiles AP2/ERF domain profile. 138 196 IPR001471 GO:0003700|GO:0006355
Gso11g0315 276 CDD AP2 137 196 IPR001471 GO:0003700|GO:0006355
Gso11g0315 276 Pfam AP2 domain 138 188 IPR001471 GO:0003700|GO:0006355
Gso11g0315 276 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700|GO:0006355
Gso11g0315 276 PRINTS Ethylene responsive element binding protein signature 178 198 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0315 Gso-Chr11 2648429 2649420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0315 1 276 AP2-EREBP Transcription Factor Family AT5G47230 47.419 3.08e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso11g0315 AP2 5.7e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0315 K09286 - gmx:100800788 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1760 1 54411265 54412286 Gso11g0315 11 2648429 2649420 GST