Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0310 ATGACGGTTGAAAAGGAAGATTTGGGTTTGAGTCTAAGCTTGAGCTTCCCTCAGAACCCCCCAACTCATCTTCATCTCAATCTCGTTTCCTCTTCTCCTTCCAGCCACAACCCTCAGAAACCCTCTTGGAACGACCCTTTCACTTCTTCAGCTGGATCATCATTCCTTCGAGGAATCGATGTGAACCGTTTACCTTCTGTGGTCGATTGCGAAGAGGAAGCAGGTGTGTCATCTCCAAACAGCACGGTTTCTAGTGTCAGTGGAAAACGTAGCGAGAGGGAAGAAGCCAATGGTGAAGAAAACGACACAGACAGAGCTTGTTCCAGAGGCATCATCAGCGACGAAGAAGATGCCGAAACCTCTAGAAAGAAACTTAGACTCTCCAAAGACCAATCAATTATCCTCGAAGAGAGCTTCAAAGAACACAACACTCTCAACCCCAAACAAAAGTTGGCGCTGGCGAAACAGCTGGGTCTTCGAGCGAGACAAGTGGAGGTGTGGTTCCAGAACAGAAGGGCAAGGACCAAGCTGAAGCAAACGGAAGTTGACTGTGAGTTTTTGAAAAGGTGCTGCGAGAATCTGACCGTGGAGAACAGGAGGTTGCAGAAGGAAGTGCAAGAGCTTAGAGCACTGAAACTTTCCCCGCAGTTCTACATGCACATGACCCCACCCACCACTCTCACCATGTGCCCCTCGTGTGAGCGTGTCGCGGTTCCCCCCTCCTCCGCCGTTGATCCTGCCATGCGTCACCATCACGTGCCTCCTACACAACCTCGGGCCTTCCCCATTGGCCCATGGGCCACCGCTGCCGCCACTATCCCGCACAGGCCCTTCGATGCCCTCCGTCGCAGATCTTGA 858 0.5221 MTVEKEDLGLSLSLSFPQNPPTHLHLNLVSSSPSSHNPQKPSWNDPFTSSAGSSFLRGIDVNRLPSVVDCEEEAGVSSPNSTVSSVSGKRSEREEANGEENDTDRACSRGIISDEEDAETSRKKLRLSKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTVENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSSAVDPAMRHHHVPPTQPRAFPIGPWATAAATIPHRPFDALRRRS* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0310 285 PANTHER - 2 275 - -
Gso11g0310 285 SMART HOX_1 120 182 IPR001356 GO:0003677
Gso11g0310 285 Gene3D - 126 176 - -
Gso11g0310 285 SMART halz 178 221 IPR003106 GO:0006355|GO:0043565
Gso11g0310 285 MobiDBLite consensus disorder prediction 70 124 - -
Gso11g0310 285 CDD homeodomain 122 179 IPR001356 GO:0003677
Gso11g0310 285 MobiDBLite consensus disorder prediction 1 48 - -
Gso11g0310 285 Pfam HD-ZIP protein N terminus 3 94 IPR006712 GO:0005634
Gso11g0310 285 MobiDBLite consensus disorder prediction 88 124 - -
Gso11g0310 285 PRINTS Lambda-repressor HTH signature 149 158 IPR000047 GO:0003677
Gso11g0310 285 PRINTS Lambda-repressor HTH signature 158 174 IPR000047 GO:0003677
Gso11g0310 285 MobiDBLite consensus disorder prediction 12 48 - -
Gso11g0310 285 SUPERFAMILY Homeodomain-like 116 179 IPR009057 -
Gso11g0310 285 ProSiteProfiles 'Homeobox' domain profile. 118 178 IPR001356 GO:0003677
Gso11g0310 285 ProSitePatterns 'Homeobox' domain signature. 153 176 IPR017970 GO:0000981|GO:0006355
Gso11g0310 285 Pfam Homeobox associated leucine zipper 178 212 IPR003106 GO:0006355|GO:0043565
Gso11g0310 285 Coils Coil 184 211 - -
Gso11g0310 285 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 275 - -
Gso11g0310 285 Pfam Homeodomain 122 176 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0310 Gso-Chr11 2610865 2612823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0310 1 285 Homeobox Transcription Factor Family AT5G47370 62.290 1.40e-111 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso11g0310 HD-ZIP_N 7.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0310 K09338 - gmx:100783851 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1764 1 54458963 54460808 Gso11g0310 11 2610865 2612823 GST
Gso11g0310 11 2610865 2612823 Gso17g1218 17 11831555 11833755 PCT
Gso17g1218 17 11831555 11833755 Gso11g0310 11 2610865 2612823 PCT