Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0306 ATGGAAGAGGAAGATAACCAAGTCCATAACTTGACAGAAGAGAAGAAAAAAAGTGAAAACGAAGAAGTGAGTGTTGAGAGTAACGATAAGAAGAAGAAGAAGAGAAGCAGTGATGGGAAGCACCCAACGTATCGCGGTGTGCGCATGCGTAAGTGGGGGAAATGGGTATCAGAAATAAGAGAGCCCAAAAAAAAGTCCAGAATCTGGCTCGGCTCTTTTTCCACGCCAGAAATGGCGGCTCGAGCCCATGATGTCGCGGCTCTCACTATCAAAGGCACTTCTGCGTTCCTTAATTTCCCCGAATTAGCCTCACACCTTCCGCGCCCACTCACCACTTCCCCTAAGGACATCCAAGCCGCCGCCGCCAAAGCTGCTGCACTCAACTTTGAGGCCCAAGTCGAAGCCCAGGCCCAGGCCCAGCTGAGCATACCAAGTTCCTCCTCTGAGGTTGAGTTCCCTGATCTTTTACTGGACTCAAGTCACAGTGCAGGTGAGTTTGATTACTCGGCGCCGTGGCTAGTAGCCGAAGCTGAACATCTAGACTTGGCTTTTCGGCTCGATGACCCTCCTTTCCCTGCTTGGGGGTCTTACTAA 594 0.5118 MEEEDNQVHNLTEEKKKSENEEVSVESNDKKKKKRSSDGKHPTYRGVRMRKWGKWVSEIREPKKKSRIWLGSFSTPEMAARAHDVAALTIKGTSAFLNFPELASHLPRPLTTSPKDIQAAAAKAAALNFEAQVEAQAQAQLSIPSSSSEVEFPDLLLDSSHSAGEFDYSAPWLVAEAEHLDLAFRLDDPPFPAWGSY* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0306 197 MobiDBLite consensus disorder prediction 1 46 - -
Gso11g0306 197 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677
Gso11g0306 197 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Gso11g0306 197 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Gso11g0306 197 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Gso11g0306 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 161 - -
Gso11g0306 197 Coils Coil 1 28 - -
Gso11g0306 197 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Gso11g0306 197 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
Gso11g0306 197 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Gso11g0306 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 12 161 - -
Gso11g0306 197 MobiDBLite consensus disorder prediction 8 33 - -
Gso11g0306 197 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0306 Gso-Chr11 2571983 2572781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0306 18 127 AP2-EREBP Transcription Factor Family AT5G11590 68.421 8.88e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso11g0306 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0306 - - gmx:100817503 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0306 11 2571983 2572781 Gso5g0526 5 5824387 5825592 PCT
Gso11g0306 11 2571983 2572781 Gso17g1215 17 11731769 11733126 PCT
Gso5g0526 5 5824387 5825592 Gso11g0306 11 2571983 2572781 PCT
Gso17g1215 17 11731769 11733126 Gso11g0306 11 2571983 2572781 PCT