Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0304 ATGGCACCCCCGAGGAATGTTGAAACTGCTAAGAAAACAAACAACAGAGGAGCATGGACCGCGGAGGAAGATCAGAAGCTAGCCCAGTGCATTGAAATTCACGGTGCAAAGAAATGGAAAACTGTTGCAATTAAATCAGGTCTAAACAGATGTGGAAAAAGTTGCAGGCTGAGATGGTTAAACTATTTGAGACCAAATATCAAGAGGGGCAACATATCAGTTGAGGAAGAGGATTTGATTATTAGGCTTCACAAACTGCTGGGAAACAGGTGGTCATTGATAGCTAAGAGACTTCCAGGACGAACAGACAATGAAATTAAGAACTACTGGAATACTTGTTTGTGCAAAAAAGTTAATCACAAAAAGGTGAAACCTGAAACTTCAACGGCACAAACAACGCATACGACTCAGAATACCGAGGAAAGAGCAGCGGTAGAGAATAAAGAGGGCACTGATGATGGGAGTGGGGACTCAGAAGTTAACTTTGATGTGAACGAATTCTTCAACTTCTCCATTGAATCTGGACCCTTTGCGTTGGATTGGATGATCTAA 552 0.4203 MAPPRNVETAKKTNNRGAWTAEEDQKLAQCIEIHGAKKWKTVAIKSGLNRCGKSCRLRWLNYLRPNIKRGNISVEEEDLIIRLHKLLGNRWSLIAKRLPGRTDNEIKNYWNTCLCKKVNHKKVKPETSTAQTTHTTQNTEERAAVENKEGTDDGSGDSEVNFDVNEFFNFSIESGPFALDWMI* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0304 183 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Gso11g0304 183 MobiDBLite consensus disorder prediction 141 155 - -
Gso11g0304 183 Gene3D - 7 69 - -
Gso11g0304 183 MobiDBLite consensus disorder prediction 124 158 - -
Gso11g0304 183 MobiDBLite consensus disorder prediction 125 140 - -
Gso11g0304 183 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Gso11g0304 183 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Gso11g0304 183 CDD SANT 73 112 IPR001005 -
Gso11g0304 183 SUPERFAMILY Homeodomain-like 15 110 IPR009057 -
Gso11g0304 183 CDD SANT 18 63 IPR001005 -
Gso11g0304 183 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Gso11g0304 183 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Gso11g0304 183 Gene3D - 72 146 - -
Gso11g0304 183 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 4 182 - -
Gso11g0304 183 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Gso11g0304 183 SMART sant 15 65 IPR001005 -
Gso11g0304 183 SMART sant 68 116 IPR001005 -
Gso11g0304 183 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0304 Gso-Chr11 2559479 2561079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0304 11 141 MYB Transcription Factor Family AT4G34990 56.522 1.68e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso11g0304 Myb_DNA-binding 5.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0304 K09422 - gmx:100816449 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1767 1 54482439 54483434 Gso11g0304 11 2559479 2561079 GST
Gso11g0304 11 2559479 2561079 Gso5g0524 5 5772079 5774477 PCT
Gso11g0304 11 2559479 2561079 Gso17g1213 17 11673350 11675539 PCT
Gso5g0524 5 5772079 5774477 Gso11g0304 11 2559479 2561079 PCT
Gso17g1213 17 11673350 11675539 Gso11g0304 11 2559479 2561079 PCT