Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0291 ATGGAGCGGCACAAATGCAAGCTCTGCTCCCGAACATTCTCCAATGGCAGAGCCCTCGGTGGCCACATGAAGGCTCACTTAGCCACCCTCCCTCTTCCCCCCAAGCCACCACTTTCTCCCTCTGCTGCTTCCTTCTCTTCTAATTCCTCTTCAGAAGAAGCCACACACGATGAAAAGTCTCTGATTTATGGGTTAAGAGAGAATCCCAAGAAATGCTTCCGACTCGCAGATCCCGAGTTTAACATGGCCTCTGTGGTTCAAGACAGGGAAAGCGAGACGGAGTCAAAGAACCCAACTCGCCGACGATCCGAGCGGACCCGAAGAACCGTGAATTCTGAACTAAAAAAGGCCAAACTCAGTTTCATGGAGTCGCCAGAGCCCGTGAGCTCTGTCTCCGACACTTCTCCCGAGGAAGATGTCGCCATGTGTCTCATGATGTTGTCGAGAGACCGATGGAGTAAAAACAACAACAACAACATCATCATCATTAACAACGTTGTTAGTAATGATGATGTTGTCGAAGAAGAAGAAGAGGGTGGGAGATCAGTAGAGATCAAGTTGAGGAGAGTTCGCGGGAAGCACAAGTGTCAGAGCTGCGGGAAGACGTTTCGATCTTCACGCGCATTGGGCGGTCACAGAAGCATTTGCGAAGGTTCAGGTAACGATAGTAAAACCTTCCAATGCCCTTTTTGTTCCAAGGTGTTTGGGTCTGGTCAAGCACTCGGTGGCCACAAGAGATCTCACCTCATGCCTTCTTCGTCTTCGACCGCTAACAATGATTCTTTTAGATTGAAAGAGAGCTTCATAGATCTCAACTTGCCAGCTCCGGCCGAAGATGACGACCTTAGTGTTGTTTCTGATGCTTAA 867 0.4925 MERHKCKLCSRTFSNGRALGGHMKAHLATLPLPPKPPLSPSAASFSSNSSSEEATHDEKSLIYGLRENPKKCFRLADPEFNMASVVQDRESETESKNPTRRRSERTRRTVNSELKKAKLSFMESPEPVSSVSDTSPEEDVAMCLMMLSRDRWSKNNNNNIIIINNVVSNDDVVEEEEEGGRSVEIKLRRVRGKHKCQSCGKTFRSSRALGGHRSICEGSGNDSKTFQCPFCSKVFGSGQALGGHKRSHLMPSSSSTANNDSFRLKESFIDLNLPAPAEDDDLSVVSDA* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0291 288 MobiDBLite consensus disorder prediction 84 110 - -
Gso11g0291 288 Pfam C2H2-type zinc finger 3 28 - -
Gso11g0291 288 Pfam C2H2-type zinc finger 194 213 - -
Gso11g0291 288 Pfam C2H2-type zinc finger 226 249 - -
Gso11g0291 288 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Gso11g0291 288 Gene3D Classic Zinc Finger 191 248 - -
Gso11g0291 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 223 IPR013087 -
Gso11g0291 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Gso11g0291 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 253 IPR013087 -
Gso11g0291 288 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Gso11g0291 288 SMART c2h2final6 4 26 IPR013087 -
Gso11g0291 288 SMART c2h2final6 226 248 IPR013087 -
Gso11g0291 288 SMART c2h2final6 194 214 IPR013087 -
Gso11g0291 288 MobiDBLite consensus disorder prediction 28 58 - -
Gso11g0291 288 MobiDBLite consensus disorder prediction 89 110 - -
Gso11g0291 288 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Gso11g0291 288 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 288 - -
Gso11g0291 288 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 288 IPR044303 GO:0006355
Gso11g0291 288 SUPERFAMILY beta-beta-alpha zinc fingers 194 248 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0291 Gso-Chr11 2447480 2448810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0291 1 285 C2H2 Transcription Factor Family AT3G60580 37.383 1.24e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g0291 zf-C2H2_6 9.1e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0291 - - gmx:100811637 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1780 1 54597238 54598478 Gso11g0291 11 2447480 2448810 GST
Gso11g0291 11 2447480 2448810 Gso5g0507 5 5554481 5556003 PCT
Gso11g0291 11 2447480 2448810 Gso17g1202 17 11557489 11558743 PCT
Gso5g0507 5 5554481 5556003 Gso11g0291 11 2447480 2448810 PCT
Gso17g1202 17 11557489 11558743 Gso11g0291 11 2447480 2448810 PCT