Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0270 ATGAATACTTTTTCACATGTTCCTCCTGGCTTTCGCTTCCATCCCACCGATGAAGAACTTGTTGATTACTATCTTAGGAAAAAGGTAGCTTCTAAAAGGATTGATCTAGATATCATAAAAGATGTCGATCTCTATAAAATCGAGCCATGGGATCTTCAAGAATTATGCAAAATAGGAAGCGATGAAGAAAATGAATGGTATTTCTTTAGTCATAAAGACAAGAAGTACCCCACTGGGACTCGTACCAATAGAGCTACAAAGGCAGGGTTCTGGAAGGCTACAGGAAGGGACAAGGCAATTCACTCTAGCCCTAGGCATTTCCTTATTGGCATGAGAAAGACTCTCGTCTTTTACAAAGGACGAGCCCCCAATGGACAGAAATCTGACTGGATCATGCATGAATACCGCCTAGAAACTAATCAAAATGGAACTACTCAGGAAGAAGGCTGGGTTGTATGTAGAGTGTTCAAAAAACGAATGACAACAGTGAGGAAAATGGGGGAGTATGAGTCACCATGTTGGTATGATGACCCAGCTGTCTCATTCATGCAAGAGCTTGAATCCCCAAGCAGAATTTCTAACCCTTATGCATCATACCACCAGCACTACCCTTTCAAGAAGGAGTTGGAATTGCAATTCAATATACCCCATGATGCTTTCCTCCAACTTCCACAGCTAGAGAGTCCCAAAGTTCCTCAATCTTCAACCAGTTTGAATTGTAGCCAAGTTATCCCATATGGCTATGGTAGCAATAATAATGGCAATGCTTTGCAGTCATTGTCACTCACGCAAGAGGAACACATAAAACAACATTGCCAGCAACAAAGTCTGCAATTTCCGTATGGTAGCAATGATCAAGCAGTGGACCCTGCTACGGATTGGAGAGTACTTGACAAATTTGTGGCTTCTCAGCTCAGTCACGATCAACATTTTTCCAAGGAAACAAGTTATTCCAAAGTGGCCGAACAAATTAAGTTGCTAGCAAACGGATGCACAAAAACGGAGATTGGCCAGGAGATGGCTTCAACTTCCACCCTTCCACCTCCAGTTGCCAGATTGACCTGTGGAAATGAAAGTTTATAG 1083 0.4238 MNTFSHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDIIKDVDLYKIEPWDLQELCKIGSDEENEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIHSSPRHFLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNQNGTTQEEGWVVCRVFKKRMTTVRKMGEYESPCWYDDPAVSFMQELESPSRISNPYASYHQHYPFKKELELQFNIPHDAFLQLPQLESPKVPQSSTSLNCSQVIPYGYGSNNNGNALQSLSLTQEEHIKQHCQQQSLQFPYGSNDQAVDPATDWRVLDKFVASQLSHDQHFSKETSYSKVAEQIKLLANGCTKTEIGQEMASTSTLPPPVARLTCGNESL* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0270 360 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Gso11g0270 360 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 326 - -
Gso11g0270 360 Pfam No apical meristem (NAM) protein 8 137 IPR003441 GO:0003677|GO:0006355
Gso11g0270 360 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Gso11g0270 360 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Gso11g0270 360 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0270 Gso-Chr11 2241671 2246071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0270 1 309 NAC Transcription Factor Family AT1G12260 61.415 1.07e-126 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso11g0270 NAM 1.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0270 - - gmx:100779370 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0270 11 2241671 2246071 Gso5g0473 5 5034497 5041140 PCT
Gso11g0270 11 2241671 2246071 Gso17g1165 17 11154422 11160787 PCT
Gso5g0473 5 5034497 5041140 Gso11g0270 11 2241671 2246071 PCT
Gso17g1165 17 11154422 11160787 Gso11g0270 11 2241671 2246071 PCT